BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

247 related articles for article (PubMed ID: 37323566)

  • 1. Subcellular spatially resolved gene neighborhood networks in single cells.
    Fang Z; Ford AJ; Hu T; Zhang N; Mantalaris A; Coskun AF
    Cell Rep Methods; 2023 May; 3(5):100476. PubMed ID: 37323566
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Computational solutions for spatial transcriptomics.
    Kleino I; Frolovaitė P; Suomi T; Elo LL
    Comput Struct Biotechnol J; 2022; 20():4870-4884. PubMed ID: 36147664
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression.
    Xia C; Fan J; Emanuel G; Hao J; Zhuang X
    Proc Natl Acad Sci U S A; 2019 Sep; 116(39):19490-19499. PubMed ID: 31501331
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
    Chen KH; Boettiger AN; Moffitt JR; Wang S; Zhuang X
    Science; 2015 Apr; 348(6233):aaa6090. PubMed ID: 25858977
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomic data with nonuniform cellular densities.
    Miller BF; Bambah-Mukku D; Dulac C; Zhuang X; Fan J
    Genome Res; 2021 Oct; 31(10):1843-1855. PubMed ID: 34035045
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning.
    Laubscher E; Wang X; Razin N; Dougherty T; Xu RJ; Ombelets L; Pao E; Graf W; Moffitt JR; Yue Y; Van Valen D
    Cell Syst; 2024 May; 15(5):475-482.e6. PubMed ID: 38754367
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analyses.
    Liu S; Punthambaker S; Iyer EPR; Ferrante T; Goodwin D; Fürth D; Pawlowski AC; Jindal K; Tam JM; Mifflin L; Alon S; Sinha A; Wassie AT; Chen F; Cheng A; Willocq V; Meyer K; Ling KH; Camplisson CK; Kohman RE; Aach J; Lee JH; Yankner BA; Boyden ES; Church GM
    Nucleic Acids Res; 2021 Jun; 49(10):e58. PubMed ID: 33693773
    [TBL] [Abstract][Full Text] [Related]  

  • 8. High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization.
    Moffitt JR; Hao J; Wang G; Chen KH; Babcock HP; Zhuang X
    Proc Natl Acad Sci U S A; 2016 Sep; 113(39):11046-51. PubMed ID: 27625426
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Omics goes spatial epigenomics.
    Schueder F; Bewersdorf J
    Cell; 2022 Nov; 185(23):4253-4255. PubMed ID: 36368304
    [TBL] [Abstract][Full Text] [Related]  

  • 10. High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing.
    Moffitt JR; Hao J; Bambah-Mukku D; Lu T; Dulac C; Zhuang X
    Proc Natl Acad Sci U S A; 2016 Dec; 113(50):14456-14461. PubMed ID: 27911841
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding.
    Shen R; Liu L; Wu Z; Zhang Y; Yuan Z; Guo J; Yang F; Zhang C; Chen B; Feng W; Liu C; Guo J; Fan G; Zhang Y; Li Y; Xu X; Yao J
    Nat Commun; 2022 Dec; 13(1):7640. PubMed ID: 36496406
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MERFISHing for spatial context.
    Shalek AK; Satija R
    Trends Immunol; 2015 Jul; 36(7):390-1. PubMed ID: 26013647
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Cell segmentation in imaging-based spatial transcriptomics.
    Petukhov V; Xu RJ; Soldatov RA; Cadinu P; Khodosevich K; Moffitt JR; Kharchenko PV
    Nat Biotechnol; 2022 Mar; 40(3):345-354. PubMed ID: 34650268
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing.
    Liu J; Tran V; Vemuri VNP; Byrne A; Borja M; Kim YJ; Agarwal S; Wang R; Awayan K; Murti A; Taychameekiatchai A; Wang B; Emanuel G; He J; Haliburton J; Oliveira Pisco A; Neff NF
    Life Sci Alliance; 2023 Jan; 6(1):. PubMed ID: 36526371
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Computer vision for image-based transcriptomics.
    Stoeger T; Battich N; Herrmann MD; Yakimovich Y; Pelkmans L
    Methods; 2015 Sep; 85():44-53. PubMed ID: 26014038
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Uncovering an Organ's Molecular Architecture at Single-Cell Resolution by Spatially Resolved Transcriptomics.
    Liao J; Lu X; Shao X; Zhu L; Fan X
    Trends Biotechnol; 2021 Jan; 39(1):43-58. PubMed ID: 32505359
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Molecularly defined and spatially resolved cell atlas of the whole mouse brain.
    Zhang M; Pan X; Jung W; Halpern AR; Eichhorn SW; Lei Z; Cohen L; Smith KA; Tasic B; Yao Z; Zeng H; Zhuang X
    Nature; 2023 Dec; 624(7991):343-354. PubMed ID: 38092912
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Placing RNA in context and space - methods for spatially resolved transcriptomics.
    Strell C; Hilscher MM; Laxman N; Svedlund J; Wu C; Yokota C; Nilsson M
    FEBS J; 2019 Apr; 286(8):1468-1481. PubMed ID: 29542254
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Highly sensitive spatial transcriptomics using FISHnCHIPs of multiple co-expressed genes.
    Zhou X; Seow WY; Ha N; Cheng TH; Jiang L; Boonruangkan J; Goh JJL; Prabhakar S; Chou N; Chen KH
    Nat Commun; 2024 Mar; 15(1):2342. PubMed ID: 38491027
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Fibroblast and Myofibroblast Subtypes: Single Cell Sequencing.
    Soliman H; Tung LW; Rossi FMV
    Methods Mol Biol; 2021; 2299():49-84. PubMed ID: 34028734
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.