BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

151 related articles for article (PubMed ID: 37326978)

  • 1. GRETTA: an R package for mapping in silico genetic interaction and essentiality networks.
    Takemon Y; Marra MA
    Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37326978
    [TBL] [Abstract][Full Text] [Related]  

  • 2. GENTANGLE: integrated computational design of gene entanglements.
    Manuel Martí J; Hsu C; Rochereau C; Xu C; Blazejewski T; Nisonoff H; Leonard SP; Kang-Yun CS; Chlebek J; Ricci DP; Park D; Wang H; Listgarten J; Jiao Y; Allen JE
    Bioinformatics; 2024 Jun; ():. PubMed ID: 38905502
    [TBL] [Abstract][Full Text] [Related]  

  • 3. screenwerk: a modular tool for the design and analysis of drug combination screens.
    Hanes R; Ayuda-Durán P; Rønneberg L; Nakken S; Hovig E; Zucknick M; Enserink JM
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36573326
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Spathial: an R package for the evolutionary analysis of biological data.
    Gardini E; Giorgi FM; Decherchi S; Cavalli A
    Bioinformatics; 2020 Nov; 36(17):4664-4667. PubMed ID: 32437522
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Semla: a versatile toolkit for spatially resolved transcriptomics analysis and visualization.
    Larsson L; Franzén L; Ståhl PL; Lundeberg J
    Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37846051
    [TBL] [Abstract][Full Text] [Related]  

  • 6. FORESEE: a tool for the systematic comparison of translational drug response modeling pipelines.
    Turnhoff LK; Hadizadeh Esfahani A; Montazeri M; Kusch N; Schuppert A
    Bioinformatics; 2019 Oct; 35(19):3846-3848. PubMed ID: 30821320
    [TBL] [Abstract][Full Text] [Related]  

  • 7. bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS).
    Malaspinas AS; Tange O; Moreno-Mayar JV; Rasmussen M; DeGiorgio M; Wang Y; Valdiosera CE; Politis G; Willerslev E; Nielsen R
    Bioinformatics; 2014 Oct; 30(20):2962-4. PubMed ID: 24974206
    [TBL] [Abstract][Full Text] [Related]  

  • 8. sismonr: simulation of in silico multi-omic networks with adjustable ploidy and post-transcriptional regulation in R.
    Angelin-Bonnet O; Biggs PJ; Baldwin S; Thomson S; Vignes M
    Bioinformatics; 2020 May; 36(9):2938-2940. PubMed ID: 31960894
    [TBL] [Abstract][Full Text] [Related]  

  • 9. G3viz: an R package to interactively visualize genetic mutation data using a lollipop-diagram.
    Guo X; Zhang B; Zeng W; Zhao S; Ge D
    Bioinformatics; 2020 Feb; 36(3):928-929. PubMed ID: 31393560
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Analysing high-throughput sequencing data in Python with HTSeq 2.0.
    Putri GH; Anders S; Pyl PT; Pimanda JE; Zanini F
    Bioinformatics; 2022 May; 38(10):2943-2945. PubMed ID: 35561197
    [TBL] [Abstract][Full Text] [Related]  

  • 11. promor: a comprehensive R package for label-free proteomics data analysis and predictive modeling.
    Ranathunge C; Patel SS; Pinky L; Correll VL; Chen S; Semmes OJ; Armstrong RK; Combs CD; Nyalwidhe JO
    Bioinform Adv; 2023; 3(1):vbad025. PubMed ID: 36922981
    [TBL] [Abstract][Full Text] [Related]  

  • 12. GlyGen data model and processing workflow.
    Kahsay R; Vora J; Navelkar R; Mousavi R; Fochtman BC; Holmes X; Pattabiraman N; Ranzinger R; Mahadik R; Williamson T; Kulkarni S; Agarwal G; Martin M; Vasudev P; Garcia L; Edwards N; Zhang W; Natale DA; Ross K; Aoki-Kinoshita KF; Campbell MP; York WS; Mazumder R
    Bioinformatics; 2020 Jun; 36(12):3941-3943. PubMed ID: 32324859
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Collecting and managing taxonomic data with NCBI-taxonomist.
    Buchmann JP; Holmes EC
    Bioinformatics; 2021 Apr; 36(22-23):5548-5550. PubMed ID: 33326008
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ggtranscript: an R package for the visualization and interpretation of transcript isoforms using ggplot2.
    Gustavsson EK; Zhang D; Reynolds RH; Garcia-Ruiz S; Ryten M
    Bioinformatics; 2022 Aug; 38(15):3844-3846. PubMed ID: 35751589
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Breeze: an integrated quality control and data analysis application for high-throughput drug screening.
    Potdar S; Ianevski A; Mpindi JP; Bychkov D; Fiere C; Ianevski P; Yadav B; Wennerberg K; Aittokallio T; Kallioniemi O; Saarela J; Östling P
    Bioinformatics; 2020 Jun; 36(11):3602-3604. PubMed ID: 32119072
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Highly significant improvement of protein sequence alignments with AlphaFold2.
    Baltzis A; Mansouri L; Jin S; Langer BE; Erb I; Notredame C
    Bioinformatics; 2022 Nov; 38(22):5007-5011. PubMed ID: 36130276
    [TBL] [Abstract][Full Text] [Related]  

  • 17. hCoCena: horizontal integration and analysis of transcriptomics datasets.
    Oestreich M; Holsten L; Agrawal S; Dahm K; Koch P; Jin H; Becker M; Ulas T
    Bioinformatics; 2022 Oct; 38(20):4727-4734. PubMed ID: 36018233
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DeepPheWAS: an R package for phenotype generation and association analysis for phenome-wide association studies.
    Packer RJ; Williams AT; Hennah W; Eisenberg MT; Shrine N; Fawcett KA; Pearson W; Guyatt AL; Edris A; Hollox EJ; Marttila M; Rao BS; Bratty JR; Wain LV; Dudbridge F; Tobin MD
    Bioinformatics; 2023 Apr; 39(4):. PubMed ID: 36744935
    [TBL] [Abstract][Full Text] [Related]  

  • 19. mapDATAge: a ShinyR package to chart ancient DNA data through space and time.
    Liu X; Orlando L
    Bioinformatics; 2022 Aug; 38(16):3992-3994. PubMed ID: 35771611
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Flashfm-ivis: interactive visualization for fine-mapping of multiple quantitative traits.
    Zhou F; Butterworth AS; Asimit JL
    Bioinformatics; 2022 Sep; 38(17):4238-4242. PubMed ID: 35792838
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.