223 related articles for article (PubMed ID: 37339987)
1. Imputation of ancient human genomes.
Sousa da Mota B; Rubinacci S; Cruz Dávalos DI; G Amorim CE; Sikora M; Johannsen NN; Szmyt MH; Włodarczak P; Szczepanek A; Przybyła MM; Schroeder H; Allentoft ME; Willerslev E; Malaspinas AS; Delaneau O
Nat Commun; 2023 Jun; 14(1):3660. PubMed ID: 37339987
[TBL] [Abstract][Full Text] [Related]
2. Evaluating genotype imputation pipeline for ultra-low coverage ancient genomes.
Hui R; D'Atanasio E; Cassidy LM; Scheib CL; Kivisild T
Sci Rep; 2020 Oct; 10(1):18542. PubMed ID: 33122697
[TBL] [Abstract][Full Text] [Related]
3. Assessing the impact of post-mortem damage and contamination on imputation performance in ancient DNA.
Garrido Marques A; Rubinacci S; Malaspinas AS; Delaneau O; Sousa da Mota B
Sci Rep; 2024 Mar; 14(1):6227. PubMed ID: 38486065
[TBL] [Abstract][Full Text] [Related]
4. A High-Coverage Mesolithic Aurochs Genome and Effective Leveraging of Ancient Cattle Genomes Using Whole Genome Imputation.
Erven JAM; Scheu A; Verdugo MP; Cassidy L; Chen N; Gehlen B; Street M; Madsen O; Mullin VE
Mol Biol Evol; 2024 May; 41(5):. PubMed ID: 38662789
[TBL] [Abstract][Full Text] [Related]
5. An empirical evaluation of genotype imputation of ancient DNA.
Ausmees K; Sanchez-Quinto F; Jakobsson M; Nettelblad C
G3 (Bethesda); 2022 May; 12(6):. PubMed ID: 35482488
[TBL] [Abstract][Full Text] [Related]
6. Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputation.
Brouard JS; Boyle B; Ibeagha-Awemu EM; Bissonnette N
BMC Genet; 2017 Apr; 18(1):32. PubMed ID: 28381212
[TBL] [Abstract][Full Text] [Related]
7. Imputation of ancient canid genomes reveals inbreeding history over the past 10,000 years.
Bougiouri K; Charlton S; Harris A; Carmagnini A; Piličiauskienė G; Feuerborn TR; Scarsbrook L; Tabadda K; Blaževičius P; Parker HG; Gopalakrishnan S; Larson G; Ostrander EA; Irving-Pease EK; Frantz LAF; Racimo F
bioRxiv; 2024 Mar; ():. PubMed ID: 38903121
[TBL] [Abstract][Full Text] [Related]
8. Comparing low-pass sequencing and genotyping for trait mapping in pharmacogenetics.
Wasik K; Berisa T; Pickrell JK; Li JH; Fraser DJ; King K; Cox C
BMC Genomics; 2021 Mar; 22(1):197. PubMed ID: 33743587
[TBL] [Abstract][Full Text] [Related]
9. Imputation-based genomic coverage assessments of current human genotyping arrays.
Nelson SC; Doheny KF; Pugh EW; Romm JM; Ling H; Laurie CA; Browning SR; Weir BS; Laurie CC
G3 (Bethesda); 2013 Oct; 3(10):1795-807. PubMed ID: 23979933
[TBL] [Abstract][Full Text] [Related]
10. Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies.
Hao K; Chudin E; McElwee J; Schadt EE
BMC Genet; 2009 Jun; 10():27. PubMed ID: 19531258
[TBL] [Abstract][Full Text] [Related]
11. Whole-genome characterization in pedigreed non-human primates using genotyping-by-sequencing (GBS) and imputation.
Bimber BN; Raboin MJ; Letaw J; Nevonen KA; Spindel JE; McCouch SR; Cervera-Juanes R; Spindel E; Carbone L; Ferguson B; Vinson A
BMC Genomics; 2016 Aug; 17(1):676. PubMed ID: 27558348
[TBL] [Abstract][Full Text] [Related]
12. Fast imputation using medium or low-coverage sequence data.
VanRaden PM; Sun C; O'Connell JR
BMC Genet; 2015 Jul; 16():82. PubMed ID: 26168789
[TBL] [Abstract][Full Text] [Related]
13. Accurate Genotype Imputation in Multiparental Populations from Low-Coverage Sequence.
Zheng C; Boer MP; van Eeuwijk FA
Genetics; 2018 Sep; 210(1):71-82. PubMed ID: 30045858
[TBL] [Abstract][Full Text] [Related]
14. Comprehensive evaluation of imputation performance in African Americans.
Chanda P; Yuhki N; Li M; Bader JS; Hartz A; Boerwinkle E; Kao WH; Arking DE
J Hum Genet; 2012 Jul; 57(7):411-21. PubMed ID: 22648186
[TBL] [Abstract][Full Text] [Related]
15. LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms.
Money D; Gardner K; Migicovsky Z; Schwaninger H; Zhong GY; Myles S
G3 (Bethesda); 2015 Sep; 5(11):2383-90. PubMed ID: 26377960
[TBL] [Abstract][Full Text] [Related]
16. Rare variant genotype imputation with thousands of study-specific whole-genome sequences: implications for cost-effective study designs.
Pistis G; Porcu E; Vrieze SI; Sidore C; Steri M; Danjou F; Busonero F; Mulas A; Zoledziewska M; Maschio A; Brennan C; Lai S; Miller MB; Marcelli M; Urru MF; Pitzalis M; Lyons RH; Kang HM; Jones CM; Angius A; Iacono WG; Schlessinger D; McGue M; Cucca F; Abecasis GR; Sanna S
Eur J Hum Genet; 2015 Jul; 23(7):975-83. PubMed ID: 25293720
[TBL] [Abstract][Full Text] [Related]
17. Low-pass sequencing increases the power of GWAS and decreases measurement error of polygenic risk scores compared to genotyping arrays.
Li JH; Mazur CA; Berisa T; Pickrell JK
Genome Res; 2021 Apr; 31(4):529-537. PubMed ID: 33536225
[TBL] [Abstract][Full Text] [Related]
18. A cautionary tale of low-pass sequencing and imputation with respect to haplotype accuracy.
Wragg D; Zhang W; Peterson S; Yerramilli M; Mellanby R; Schoenebeck JJ; Clements DN
Genet Sel Evol; 2024 Jan; 56(1):6. PubMed ID: 38216889
[TBL] [Abstract][Full Text] [Related]
19. Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples.
Renaud G; Hanghøj K; Korneliussen TS; Willerslev E; Orlando L
Genetics; 2019 Jul; 212(3):587-614. PubMed ID: 31088861
[TBL] [Abstract][Full Text] [Related]
20. Imputation of Ancient Whole Genome
Erven JAM; Çakirlar C; Bradley DG; Raemaekers DCM; Madsen O
Front Genet; 2022; 13():872486. PubMed ID: 35903348
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
