242 related articles for article (PubMed ID: 37340778)
1. Integration of hybrid and self-correction method improves the quality of long-read sequencing data.
Tang T; Liu Y; Zheng B; Li R; Zhang X; Liu Y
Brief Funct Genomics; 2024 May; 23(3):249-255. PubMed ID: 37340778
[TBL] [Abstract][Full Text] [Related]
2. LRCstats, a tool for evaluating long reads correction methods.
La S; Haghshenas E; Chauve C
Bioinformatics; 2017 Nov; 33(22):3652-3654. PubMed ID: 29036421
[TBL] [Abstract][Full Text] [Related]
3. A hybrid and scalable error correction algorithm for indel and substitution errors of long reads.
Das AK; Goswami S; Lee K; Park SJ
BMC Genomics; 2019 Dec; 20(Suppl 11):948. PubMed ID: 31856721
[TBL] [Abstract][Full Text] [Related]
4. A comprehensive evaluation of long read error correction methods.
Zhang H; Jain C; Aluru S
BMC Genomics; 2020 Dec; 21(Suppl 6):889. PubMed ID: 33349243
[TBL] [Abstract][Full Text] [Related]
5. HALC: High throughput algorithm for long read error correction.
Bao E; Lan L
BMC Bioinformatics; 2017 Apr; 18(1):204. PubMed ID: 28381259
[TBL] [Abstract][Full Text] [Related]
6. A Sequence-Based Novel Approach for Quality Evaluation of Third-Generation Sequencing Reads.
Zhang W; Huang N; Zheng J; Liao X; Wang J; Li HD
Genes (Basel); 2019 Jan; 10(1):. PubMed ID: 30646604
[TBL] [Abstract][Full Text] [Related]
7. PaSS: a sequencing simulator for PacBio sequencing.
Zhang W; Jia B; Wei C
BMC Bioinformatics; 2019 Jun; 20(1):352. PubMed ID: 31226925
[TBL] [Abstract][Full Text] [Related]
8. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
Du N; Chen J; Sun Y
BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
[TBL] [Abstract][Full Text] [Related]
9. A comparative evaluation of hybrid error correction methods for error-prone long reads.
Fu S; Wang A; Au KF
Genome Biol; 2019 Feb; 20(1):26. PubMed ID: 30717772
[TBL] [Abstract][Full Text] [Related]
10. HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning.
Choudhury O; Chakrabarty A; Emrich SJ
Sci Rep; 2018 Jul; 8(1):9936. PubMed ID: 29967328
[TBL] [Abstract][Full Text] [Related]
11. Efficiency of PacBio long read correction by 2nd generation Illumina sequencing.
Mahmoud M; Zywicki M; Twardowski T; Karlowski WM
Genomics; 2019 Jan; 111(1):43-49. PubMed ID: 29268960
[TBL] [Abstract][Full Text] [Related]
12. Evaluation of tools for long read RNA-seq splice-aware alignment.
Križanovic K; Echchiki A; Roux J; Šikic M
Bioinformatics; 2018 Mar; 34(5):748-754. PubMed ID: 29069314
[TBL] [Abstract][Full Text] [Related]
13. Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations.
Cosma BM; Shirali Hossein Zade R; Jordan EN; van Lent P; Peng C; Pillay S; Abeel T
Gigascience; 2022 Dec; 12():. PubMed ID: 38000912
[TBL] [Abstract][Full Text] [Related]
14. Accurate self-correction of errors in long reads using de Bruijn graphs.
Salmela L; Walve R; Rivals E; Ukkonen E
Bioinformatics; 2017 Mar; 33(6):799-806. PubMed ID: 27273673
[TBL] [Abstract][Full Text] [Related]
15. LoRDEC: accurate and efficient long read error correction.
Salmela L; Rivals E
Bioinformatics; 2014 Dec; 30(24):3506-14. PubMed ID: 25165095
[TBL] [Abstract][Full Text] [Related]
16. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
Lin HH; Liao YC
PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
[TBL] [Abstract][Full Text] [Related]
17. proovread: large-scale high-accuracy PacBio correction through iterative short read consensus.
Hackl T; Hedrich R; Schultz J; Förster F
Bioinformatics; 2014 Nov; 30(21):3004-11. PubMed ID: 25015988
[TBL] [Abstract][Full Text] [Related]
18. A hybrid correcting method considering heterozygous variations by a comprehensive probabilistic model.
Liu J; Wang J; Xiao X; Lai X; Dai D; Zhang X; Zhu X; Zhao Z; Wang J; Li Z
BMC Genomics; 2020 Nov; 21(Suppl 10):753. PubMed ID: 33208104
[TBL] [Abstract][Full Text] [Related]
19. Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing.
Sharma A; Jain P; Mahgoub A; Zhou Z; Mahadik K; Chaterji S
BMC Bioinformatics; 2022 Jan; 23(1):25. PubMed ID: 34991450
[TBL] [Abstract][Full Text] [Related]
20. Comparison of long-read sequencing technologies in interrogating bacteria and fly genomes.
Tvedte ES; Gasser M; Sparklin BC; Michalski J; Hjelmen CE; Johnston JS; Zhao X; Bromley R; Tallon LJ; Sadzewicz L; Rasko DA; Dunning Hotopp JC
G3 (Bethesda); 2021 Jun; 11(6):. PubMed ID: 33768248
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]