These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
189 related articles for article (PubMed ID: 37356910)
1. CHARMM-GUI PDB Manipulator: Various PDB Structural Modifications for Biomolecular Modeling and Simulation. Park SJ; Kern N; Brown T; Lee J; Im W J Mol Biol; 2023 Jul; 435(14):167995. PubMed ID: 37356910 [TBL] [Abstract][Full Text] [Related]
2. CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues. Jo S; Cheng X; Islam SM; Huang L; Rui H; Zhu A; Lee HS; Qi Y; Han W; Vanommeslaeghe K; MacKerell AD; Roux B; Im W Adv Protein Chem Struct Biol; 2014; 96():235-65. PubMed ID: 25443960 [TBL] [Abstract][Full Text] [Related]
3. CHARMM-GUI 10 years for biomolecular modeling and simulation. Jo S; Cheng X; Lee J; Kim S; Park SJ; Patel DS; Beaven AH; Lee KI; Rui H; Park S; Lee HS; Roux B; MacKerell AD; Klauda JB; Qi Y; Im W J Comput Chem; 2017 Jun; 38(15):1114-1124. PubMed ID: 27862047 [TBL] [Abstract][Full Text] [Related]
4. CHARMM-GUI PDB Reader and Manipulator: Covalent Ligand Modeling and Simulation. Kong L; Park SJ; Im W J Mol Biol; 2024 Sep; 436(17):168554. PubMed ID: 39237201 [TBL] [Abstract][Full Text] [Related]
5. CHARMM-GUI QM/MM Interfacer for a Quantum Mechanical and Molecular Mechanical (QM/MM) Simulation Setup: 1. Semiempirical Methods. Suh D; Arattu Thodika AR; Kim S; Nam K; Im W J Chem Theory Comput; 2024 Jun; 20(12):5337-5351. PubMed ID: 38856971 [TBL] [Abstract][Full Text] [Related]
6. CHARMM-GUI ligand reader and modeler for CHARMM force field generation of small molecules. Kim S; Lee J; Jo S; Brooks CL; Lee HS; Im W J Comput Chem; 2017 Jun; 38(21):1879-1886. PubMed ID: 28497616 [TBL] [Abstract][Full Text] [Related]
7. CHARMM-GUI: a web-based graphical user interface for CHARMM. Jo S; Kim T; Iyer VG; Im W J Comput Chem; 2008 Aug; 29(11):1859-65. PubMed ID: 18351591 [TBL] [Abstract][Full Text] [Related]
8. Glycan Reader: automated sugar identification and simulation preparation for carbohydrates and glycoproteins. Jo S; Song KC; Desaire H; MacKerell AD; Im W J Comput Chem; 2011 Nov; 32(14):3135-41. PubMed ID: 21815173 [TBL] [Abstract][Full Text] [Related]
9. CHARMM-GUI DEER facilitator for spin-pair distance distribution calculations and preparation of restrained-ensemble molecular dynamics simulations. Qi Y; Lee J; Cheng X; Shen R; Islam SM; Roux B; Im W J Comput Chem; 2020 Feb; 41(5):415-420. PubMed ID: 31329318 [TBL] [Abstract][Full Text] [Related]
10. Glycan Reader is improved to recognize most sugar types and chemical modifications in the Protein Data Bank. Park SJ; Lee J; Patel DS; Ma H; Lee HS; Jo S; Im W Bioinformatics; 2017 Oct; 33(19):3051-3057. PubMed ID: 28582506 [TBL] [Abstract][Full Text] [Related]
11. CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates. Park SJ; Lee J; Qi Y; Kern NR; Lee HS; Jo S; Joung I; Joo K; Lee J; Im W Glycobiology; 2019 Apr; 29(4):320-331. PubMed ID: 30689864 [TBL] [Abstract][Full Text] [Related]
12. CHARMM-GUI Nanomaterial Modeler for Modeling and Simulation of Nanomaterial Systems. Choi YK; Kern NR; Kim S; Kanhaiya K; Afshar Y; Jeon SH; Jo S; Brooks BR; Lee J; Tadmor EB; Heinz H; Im W J Chem Theory Comput; 2022 Jan; 18(1):479-493. PubMed ID: 34871001 [TBL] [Abstract][Full Text] [Related]
13. CHARMM-GUI Membrane Builder for Complex Biological Membrane Simulations with Glycolipids and Lipoglycans. Lee J; Patel DS; Ståhle J; Park SJ; Kern NR; Kim S; Lee J; Cheng X; Valvano MA; Holst O; Knirel YA; Qi Y; Jo S; Klauda JB; Widmalm G; Im W J Chem Theory Comput; 2019 Jan; 15(1):775-786. PubMed ID: 30525595 [TBL] [Abstract][Full Text] [Related]
14. CHARMM-GUI Drude prepper for molecular dynamics simulation using the classical Drude polarizable force field. Kognole AA; Lee J; Park SJ; Jo S; Chatterjee P; Lemkul JA; Huang J; MacKerell AD; Im W J Comput Chem; 2022 Feb; 43(5):359-375. PubMed ID: 34874077 [TBL] [Abstract][Full Text] [Related]
15. CHARMM-GUI Nanodisc Builder for modeling and simulation of various nanodisc systems. Qi Y; Lee J; Klauda JB; Im W J Comput Chem; 2019 Mar; 40(7):893-899. PubMed ID: 30677169 [TBL] [Abstract][Full Text] [Related]
16. CHARMM-GUI HMMM Builder for Membrane Simulations with the Highly Mobile Membrane-Mimetic Model. Qi Y; Cheng X; Lee J; Vermaas JV; Pogorelov TV; Tajkhorshid E; Park S; Klauda JB; Im W Biophys J; 2015 Nov; 109(10):2012-22. PubMed ID: 26588561 [TBL] [Abstract][Full Text] [Related]
17. CHARMM-GUI Multicomponent Assembler for modeling and simulation of complex multicomponent systems. Kern NR; Lee J; Choi YK; Im W Nat Commun; 2024 Jun; 15(1):5459. PubMed ID: 38937468 [TBL] [Abstract][Full Text] [Related]
18. MDBuilder: a PyMOL plugin for the preparation of molecular dynamics simulations. Liu H; Jin Y; Ding H Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36790845 [TBL] [Abstract][Full Text] [Related]
19. CHARMM-GUI Membrane Builder toward realistic biological membrane simulations. Wu EL; Cheng X; Jo S; Rui H; Song KC; Dávila-Contreras EM; Qi Y; Lee J; Monje-Galvan V; Venable RM; Klauda JB; Im W J Comput Chem; 2014 Oct; 35(27):1997-2004. PubMed ID: 25130509 [TBL] [Abstract][Full Text] [Related]
20. Developing a Fully Glycosylated Full-Length SARS-CoV-2 Spike Protein Model in a Viral Membrane. Woo H; Park SJ; Choi YK; Park T; Tanveer M; Cao Y; Kern NR; Lee J; Yeom MS; Croll TI; Seok C; Im W J Phys Chem B; 2020 Aug; 124(33):7128-7137. PubMed ID: 32559081 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]