BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

146 related articles for article (PubMed ID: 37365249)

  • 1. Universal whole-genome Oxford nanopore sequencing of SARS-CoV-2 using tiled amplicons.
    Kalendar R; Kairov U; Karabayev D; Aitkulova A; Tynyshtykbayeva N; Daniyarov A; Otarbay Z; Rakhimova S; Akilzhanova A; Sarbassov D
    Sci Rep; 2023 Jun; 13(1):10334. PubMed ID: 37365249
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding.
    Freed NE; Vlková M; Faisal MB; Silander OK
    Biol Methods Protoc; 2020; 5(1):bpaa014. PubMed ID: 33029559
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants.
    Jaworski E; Langsjoen RM; Mitchell B; Judy B; Newman P; Plante JA; Plante KS; Miller AL; Zhou Y; Swetnam D; Sotcheff S; Morris V; Saada N; Machado RR; McConnell A; Widen SG; Thompson J; Dong J; Ren P; Pyles RB; Ksiazek TG; Menachery VD; Weaver SC; Routh AL
    Elife; 2021 Sep; 10():. PubMed ID: 34581669
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genomic surveillance of SARS-CoV-2 using long-range PCR primers.
    Kandel S; Hartzell SL; Ingold AK; Turner GA; Kennedy JL; Ussery DW
    Front Microbiol; 2024; 15():1272972. PubMed ID: 38440140
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Assessment of two-pool multiplex long-amplicon nanopore sequencing of SARS-CoV-2.
    Liu H; Li J; Lin Y; Bo X; Song H; Li K; Li P; Ni M
    J Med Virol; 2022 Jan; 94(1):327-334. PubMed ID: 34524690
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identification of nsp1 gene as the target of SARS-CoV-2 real-time RT-PCR using nanopore whole-genome sequencing.
    Chan WM; Ip JD; Chu AW; Yip CC; Lo LS; Chan KH; Ng AC; Poon RW; To WK; Tsang OT; Leung WS; Kwan MY; Chua GT; Chung TW; Hung IF; Kok KH; Cheng VC; Chan JF; Yuen KY; To KK
    J Med Virol; 2020 Nov; 92(11):2725-2734. PubMed ID: 32501535
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Simplified Point-of-Care Full SARS-CoV-2 Genome Sequencing Using Nanopore Technology.
    Pembaur A; Sallard E; Weil PP; Ortelt J; Ahmad-Nejad P; Postberg J
    Microorganisms; 2021 Dec; 9(12):. PubMed ID: 34946199
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism.
    Moore SC; Penrice-Randal R; Alruwaili M; Randle N; Armstrong S; Hartley C; Haldenby S; Dong X; Alrezaihi A; Almsaud M; Bentley E; Clark J; García-Dorival I; Gilmore P; Han X; Jones B; Luu L; Sharma P; Shawli G; Sun Y; Zhao Q; Pullan ST; Carter DP; Bewley K; Dunning J; Zhou EM; Solomon T; Beadsworth M; Cruise J; Crook DW; Matthews DA; Davidson AD; Mahmood Z; Aljabr W; Druce J; Vipond R; Ng L; Renia L; Openshaw PJM; Baillie JK; Carroll MW; Stewart J; Darby A; Semple M; Turtle L; Hiscox JA
    Viruses; 2020 Oct; 12(10):. PubMed ID: 33066701
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Nanopore sequencing of SARS-CoV-2: Comparison of short and long PCR-tiling amplicon protocols.
    Brejová B; Boršová K; Hodorová V; Čabanová V; Gafurov A; Fričová D; Neboháčová M; Vinař T; Klempa B; Nosek J
    PLoS One; 2021; 16(10):e0259277. PubMed ID: 34714886
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Fast and cost-effective SARS-CoV-2 variant detection using Oxford Nanopore full-length spike gene sequencing.
    Salazar C; Ferrés I; Paz M; Costábile A; Moratorio G; Moreno P; Iraola G
    Microb Genom; 2023 May; 9(5):. PubMed ID: 37200071
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-2.
    Carbo EC; Mourik K; Boers SA; Munnink BO; Nieuwenhuijse D; Jonges M; Welkers MRA; Matamoros S; van Harinxma Thoe Slooten J; Kraakman MEM; Karelioti E; van der Meer D; Veldkamp KE; Kroes ACM; Sidorov I; de Vries JJC
    Eur J Clin Microbiol Infect Dis; 2023 Jun; 42(6):701-713. PubMed ID: 37017810
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Rapid Acquisition of High-Quality SARS-CoV-2 Genome via Amplicon-Oxford Nanopore Sequencing.
    Yan Y; Wu K; Chen J; Liu H; Huang Y; Zhang Y; Xiong J; Quan W; Wu X; Liang Y; He K; Jia Z; Wang D; Liu D; Wei H; Chen J
    Virol Sin; 2021 Oct; 36(5):901-912. PubMed ID: 33851337
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis.
    Bull RA; Adikari TN; Ferguson JM; Hammond JM; Stevanovski I; Beukers AG; Naing Z; Yeang M; Verich A; Gamaarachchi H; Kim KW; Luciani F; Stelzer-Braid S; Eden JS; Rawlinson WD; van Hal SJ; Deveson IW
    Nat Commun; 2020 Dec; 11(1):6272. PubMed ID: 33298935
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants.
    Jaworski E; Langsjoen RM; Mitchell B; Judy B; Newman P; Plante JA; Plante KS; Miller AL; Zhou Y; Swetnam D; Sotcheff S; Morris V; Saada N; Machado R; McConnell A; Widen S; Thompson J; Dong J; Ren P; Pyles RB; Ksiazek T; Menachery VD; Weaver SC; Routh A
    bioRxiv; 2021 Sep; ():. PubMed ID: 33758846
    [TBL] [Abstract][Full Text] [Related]  

  • 15. High temporal resolution Nanopore sequencing dataset of SARS-CoV-2 and host cell RNAs.
    Tombácz D; Dörmő Á; Gulyás G; Csabai Z; Prazsák I; Kakuk B; Harangozó Á; Jankovics I; Dénes B; Boldogkői Z
    Gigascience; 2022 Oct; 11():. PubMed ID: 36251275
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genetic Surveillance of Five SARS-CoV-2 Clinical Samples in Henan Province Using Nanopore Sequencing.
    Wang Y; Chen D; Zhu C; Zhao Z; Gao S; Gou J; Guo Y; Kong X
    Front Immunol; 2022; 13():814806. PubMed ID: 35444655
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A Novel High-Throughput Nanopore-Sequencing-Based Strategy for Rapid and Automated S-Protein Typing of SARS-CoV-2 Variants.
    Wagner GE; Totaro MG; Volland A; Lipp M; Saiger S; Lichtenegger S; Forstner P; von Laer D; Oberdorfer G; Steinmetz I
    Viruses; 2021 Dec; 13(12):. PubMed ID: 34960817
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines.
    Brandt D; Simunovic M; Busche T; Haak M; Belmann P; Jünemann S; Schulz T; Klages LJ; Vinke S; Beckstette M; Pohl E; Scherer C; Sczyrba A; Kalinowski J
    Viruses; 2021 Sep; 13(9):. PubMed ID: 34578452
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SARS-CoV-2 variants of concern and spike protein mutational dynamics in a Swedish cohort during 2021, studied by Nanopore sequencing.
    Mannsverk S; Bergholm J; Palanisamy N; Ellström P; Kaden R; Lindh J; Lennerstrand J
    Virol J; 2022 Oct; 19(1):164. PubMed ID: 36258215
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genomic Surveillance of SARS-CoV-2 Using Long-Range PCR Primers.
    Kandel S; Hartzell SL; Ingold AK; Turner GA; Kennedy JL; Ussery DW
    bioRxiv; 2023 Jul; ():. PubMed ID: 37502853
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.