275 related articles for article (PubMed ID: 37386186)
1. A survey of algorithms for the detection of genomic structural variants from long-read sequencing data.
Ahsan MU; Liu Q; Perdomo JE; Fang L; Wang K
Nat Methods; 2023 Aug; 20(8):1143-1158. PubMed ID: 37386186
[TBL] [Abstract][Full Text] [Related]
2. SVJedi: genotyping structural variations with long reads.
Lecompte L; Peterlongo P; Lavenier D; Lemaitre C
Bioinformatics; 2020 Nov; 36(17):4568-4575. PubMed ID: 32437523
[TBL] [Abstract][Full Text] [Related]
3. SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data.
Gu W; Zhou A; Wang L; Sun S; Cui X; Zhu D
J Comput Biol; 2021 Aug; 28(8):774-788. PubMed ID: 33973820
[TBL] [Abstract][Full Text] [Related]
4. Automated filtering of genome-wide large deletions through an ensemble deep learning framework.
Hu Y; Mangal S; Zhang L; Zhou X
Methods; 2022 Oct; 206():77-86. PubMed ID: 36038049
[TBL] [Abstract][Full Text] [Related]
5. Characterization of structural variants with single molecule and hybrid sequencing approaches.
Ritz A; Bashir A; Sindi S; Hsu D; Hajirasouliha I; Raphael BJ
Bioinformatics; 2014 Dec; 30(24):3458-66. PubMed ID: 25355789
[TBL] [Abstract][Full Text] [Related]
6. Toolkit for automated and rapid discovery of structural variants.
Soylev A; Kockan C; Hormozdiari F; Alkan C
Methods; 2017 Oct; 129():3-7. PubMed ID: 28583483
[TBL] [Abstract][Full Text] [Related]
7. Comparison and benchmark of structural variants detected from long read and long-read assembly.
Lin J; Jia P; Wang S; Kosters W; Ye K
Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37200087
[TBL] [Abstract][Full Text] [Related]
8. NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data.
Fang L; Hu J; Wang D; Wang K
BMC Bioinformatics; 2018 May; 19(1):180. PubMed ID: 29792160
[TBL] [Abstract][Full Text] [Related]
9. Precise characterization of somatic complex structural variations from tumor/control paired long-read sequencing data with nanomonsv.
Shiraishi Y; Koya J; Chiba K; Okada A; Arai Y; Saito Y; Shibata T; Kataoka K
Nucleic Acids Res; 2023 Aug; 51(14):e74. PubMed ID: 37336583
[TBL] [Abstract][Full Text] [Related]
10. Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies.
Zhao X; Collins RL; Lee WP; Weber AM; Jun Y; Zhu Q; Weisburd B; Huang Y; Audano PA; Wang H; Walker M; Lowther C; Fu J; ; Gerstein MB; Devine SE; Marschall T; Korbel JO; Eichler EE; Chaisson MJP; Lee C; Mills RE; Brand H; Talkowski ME
Am J Hum Genet; 2021 May; 108(5):919-928. PubMed ID: 33789087
[TBL] [Abstract][Full Text] [Related]
11. Comparison of multiple algorithms to reliably detect structural variants in pears.
Liu Y; Zhang M; Sun J; Chang W; Sun M; Zhang S; Wu J
BMC Genomics; 2020 Jan; 21(1):61. PubMed ID: 31959124
[TBL] [Abstract][Full Text] [Related]
12. Initial Analysis of Structural Variation Detections in Cattle Using Long-Read Sequencing Methods.
Gao Y; Ma L; Liu GE
Genes (Basel); 2022 May; 13(5):. PubMed ID: 35627213
[TBL] [Abstract][Full Text] [Related]
13. SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads.
Denti L; Khorsand P; Bonizzoni P; Hormozdiari F; Chikhi R
Nat Methods; 2023 Apr; 20(4):550-558. PubMed ID: 36550274
[TBL] [Abstract][Full Text] [Related]
14. Genome-wide reconstruction of complex structural variants using read clouds.
Spies N; Weng Z; Bishara A; McDaniel J; Catoe D; Zook JM; Salit M; West RB; Batzoglou S; Sidow A
Nat Methods; 2017 Sep; 14(9):915-920. PubMed ID: 28714986
[TBL] [Abstract][Full Text] [Related]
15. Discovery and genotyping of structural variation from long-read haploid genome sequence data.
Huddleston J; Chaisson MJP; Steinberg KM; Warren W; Hoekzema K; Gordon D; Graves-Lindsay TA; Munson KM; Kronenberg ZN; Vives L; Peluso P; Boitano M; Chin CS; Korlach J; Wilson RK; Eichler EE
Genome Res; 2017 May; 27(5):677-685. PubMed ID: 27895111
[TBL] [Abstract][Full Text] [Related]
16. Assessing structural variation in a personal genome-towards a human reference diploid genome.
English AC; Salerno WJ; Hampton OA; Gonzaga-Jauregui C; Ambreth S; Ritter DI; Beck CR; Davis CF; Dahdouli M; Ma S; Carroll A; Veeraraghavan N; Bruestle J; Drees B; Hastie A; Lam ET; White S; Mishra P; Wang M; Han Y; Zhang F; Stankiewicz P; Wheeler DA; Reid JG; Muzny DM; Rogers J; Sabo A; Worley KC; Lupski JR; Boerwinkle E; Gibbs RA
BMC Genomics; 2015 Apr; 16(1):286. PubMed ID: 25886820
[TBL] [Abstract][Full Text] [Related]
17. NPSV-deep: a deep learning method for genotyping structural variants in short read genome sequencing data.
Linderman MD; Wallace J; van der Heyde A; Wieman E; Brey D; Shi Y; Hansen P; Shamsi Z; Liu J; Gelb BD; Bashir A
Bioinformatics; 2024 Mar; 40(3):. PubMed ID: 38444093
[TBL] [Abstract][Full Text] [Related]
18. Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear.
Liu Y; Zhang M; Wang R; Li B; Jiang Y; Sun M; Chang Y; Wu J
BMC Genomics; 2022 Dec; 23(1):830. PubMed ID: 36517766
[TBL] [Abstract][Full Text] [Related]
19. Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection.
Canaguier A; Guilbaud R; Denis E; Magdelenat G; Belser C; Istace B; Cruaud C; Wincker P; Le Paslier MC; Faivre-Rampant P; Barbe V
BMC Genomics; 2022 Apr; 23(1):317. PubMed ID: 35448948
[TBL] [Abstract][Full Text] [Related]
20. SVsearcher: A more accurate structural variation detection method in long read data.
Zheng Y; Shang X; Sung WK
Comput Biol Med; 2023 May; 158():106843. PubMed ID: 37019014
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]