These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
171 related articles for article (PubMed ID: 37387159)
1. A gated graph transformer for protein complex structure quality assessment and its performance in CASP15. Chen X; Morehead A; Liu J; Cheng J Bioinformatics; 2023 Jun; 39(39 Suppl 1):i308-i317. PubMed ID: 37387159 [TBL] [Abstract][Full Text] [Related]
2. Enhancing AlphaFold-Multimer-based Protein Complex Structure Prediction with MULTICOM in CASP15. Liu J; Guo Z; Wu T; Roy RS; Quadir F; Chen C; Cheng J bioRxiv; 2023 May; ():. PubMed ID: 37293073 [TBL] [Abstract][Full Text] [Related]
3. Enhancing alphafold-multimer-based protein complex structure prediction with MULTICOM in CASP15. Liu J; Guo Z; Wu T; Roy RS; Quadir F; Chen C; Cheng J Commun Biol; 2023 Nov; 6(1):1140. PubMed ID: 37949999 [TBL] [Abstract][Full Text] [Related]
4. Combining pairwise structural similarity and deep learning interface contact prediction to estimate protein complex model accuracy in CASP15. Roy RS; Liu J; Giri N; Guo Z; Cheng J bioRxiv; 2023 Mar; ():. PubMed ID: 36945536 [TBL] [Abstract][Full Text] [Related]
5. Atomic protein structure refinement using all-atom graph representations and SE(3)-equivariant graph transformer. Wu T; Guo Z; Cheng J Bioinformatics; 2023 May; 39(5):. PubMed ID: 37144951 [TBL] [Abstract][Full Text] [Related]
6. Combining protein sequences and structures with transformers and equivariant graph neural networks to predict protein function. Boadu F; Cao H; Cheng J Bioinformatics; 2023 Jun; 39(39 Suppl 1):i318-i325. PubMed ID: 37387145 [TBL] [Abstract][Full Text] [Related]
7. Assembled graph neural network using graph transformer with edges for protein model quality assessment. Dong S; Wang S J Mol Graph Model; 2022 Jan; 110():108053. PubMed ID: 34773871 [TBL] [Abstract][Full Text] [Related]
8. Combining protein sequences and structures with transformers and equivariant graph neural networks to predict protein function. Boadu F; Cao H; Cheng J bioRxiv; 2023 Jan; ():. PubMed ID: 36711471 [TBL] [Abstract][Full Text] [Related]
9. Combining pairwise structural similarity and deep learning interface contact prediction to estimate protein complex model accuracy in CASP15. Roy RS; Liu J; Giri N; Guo Z; Cheng J Proteins; 2023 Dec; 91(12):1889-1902. PubMed ID: 37357816 [TBL] [Abstract][Full Text] [Related]
10. Integrating deep learning, threading alignments, and a multi-MSA strategy for high-quality protein monomer and complex structure prediction in CASP15. Zheng W; Wuyun Q; Freddolino PL; Zhang Y Proteins; 2023 Dec; 91(12):1684-1703. PubMed ID: 37650367 [TBL] [Abstract][Full Text] [Related]
16. ComplexQA: a deep graph learning approach for protein complex structure assessment. Zhang L; Wang S; Hou J; Si D; Zhu J; Cao R Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37930021 [TBL] [Abstract][Full Text] [Related]
17. A deep dilated convolutional residual network for predicting interchain contacts of protein homodimers. Roy RS; Quadir F; Soltanikazemi E; Cheng J Bioinformatics; 2022 Mar; 38(7):1904-1910. PubMed ID: 35134816 [TBL] [Abstract][Full Text] [Related]
18. Graph embedding on biomedical networks: methods, applications and evaluations. Yue X; Wang Z; Huang J; Parthasarathy S; Moosavinasab S; Huang Y; Lin SM; Zhang W; Zhang P; Sun H Bioinformatics; 2020 Feb; 36(4):1241-1251. PubMed ID: 31584634 [TBL] [Abstract][Full Text] [Related]
19. Improved drug-target interaction prediction with intermolecular graph transformer. Liu S; Wang Y; Deng Y; He L; Shao B; Yin J; Zheng N; Liu TY; Wang T Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35514186 [TBL] [Abstract][Full Text] [Related]
20. MPTN: A message-passing transformer network for drug repurposing from knowledge graph. Liu Y; Sang G; Liu Z; Pan Y; Cheng J; Zhang Y Comput Biol Med; 2024 Jan; 168():107800. PubMed ID: 38043469 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]