These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

168 related articles for article (PubMed ID: 37395631)

  • 1. Efficient real-time selective genome sequencing on resource-constrained devices.
    Shih PJ; Saadat H; Parameswaran S; Gamaarachchi H
    Gigascience; 2022 Dec; 12():. PubMed ID: 37395631
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A hybrid short read mapping accelerator.
    Chen Y; Schmidt B; Maskell DL
    BMC Bioinformatics; 2013 Feb; 14():67. PubMed ID: 23441908
    [TBL] [Abstract][Full Text] [Related]  

  • 3. FHAST: FPGA-Based Acceleration of Bowtie in Hardware.
    Fernandez EB; Villarreal J; Lonardi S; Najjar WA
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(5):973-81. PubMed ID: 26451812
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Novel algorithms for efficient subsequence searching and mapping in nanopore raw signals towards targeted sequencing.
    Han R; Wang S; Gao X
    Bioinformatics; 2020 Mar; 36(5):1333-1343. PubMed ID: 31593235
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Shouji: a fast and efficient pre-alignment filter for sequence alignment.
    Alser M; Hassan H; Kumar A; Mutlu O; Alkan C
    Bioinformatics; 2019 Nov; 35(21):4255-4263. PubMed ID: 30923804
    [TBL] [Abstract][Full Text] [Related]  

  • 6. FPGA Correlator for Applications in Embedded Smart Devices.
    Moore CH; Lin W
    Biosensors (Basel); 2022 Apr; 12(4):. PubMed ID: 35448296
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping.
    Alser M; Hassan H; Xin H; Ergin O; Mutlu O; Alkan C
    Bioinformatics; 2017 Nov; 33(21):3355-3363. PubMed ID: 28575161
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Efficient end-to-end long-read sequence mapping using minimap2-fpga integrated with hardware accelerated chaining.
    Liyanage K; Samarakoon H; Parameswaran S; Gamaarachchi H
    Sci Rep; 2023 Nov; 13(1):20174. PubMed ID: 37978244
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ReadBouncer: precise and scalable adaptive sampling for nanopore sequencing.
    Ulrich JU; Lutfi A; Rutzen K; Renard BY
    Bioinformatics; 2022 Jun; 38(Suppl 1):i153-i160. PubMed ID: 35758774
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Heterogeneous Cloud Framework for Big Data Genome Sequencing.
    Wang C; Li X; Chen P; Wang A; Zhou X; Yu H
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(1):166-78. PubMed ID: 26357087
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer.
    Masutani B; Morishita S
    Bioinformatics; 2019 Feb; 35(4):584-592. PubMed ID: 30776078
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SimReadUntil for benchmarking selective sequencing algorithms on ONT devices.
    Mordig M; Rätsch G; Kahles A
    Bioinformatics; 2024 May; 40(5):. PubMed ID: 38603597
    [TBL] [Abstract][Full Text] [Related]  

  • 13. QAlign: aligning nanopore reads accurately using current-level modeling.
    Joshi D; Mao S; Kannan S; Diggavi S
    Bioinformatics; 2021 May; 37(5):625-633. PubMed ID: 33051648
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
    Wilton R; Li X; Feinberg AP; Szalay AS
    Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis.
    Gamaarachchi H; Lam CW; Jayatilaka G; Samarakoon H; Simpson JT; Smith MA; Parameswaran S
    BMC Bioinformatics; 2020 Aug; 21(1):343. PubMed ID: 32758139
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Nanocall: an open source basecaller for Oxford Nanopore sequencing data.
    David M; Dursi LJ; Yao D; Boutros PC; Simpson JT
    Bioinformatics; 2017 Jan; 33(1):49-55. PubMed ID: 27614348
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An FPGA Based Energy-Efficient Read Mapper With Parallel Filtering and In-Situ Verification.
    Gudur VY; Maheshwari S; Acharyya A; Shafik R
    IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(5):2697-2711. PubMed ID: 34415836
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A fully-mapped and energy-efficient FPGA accelerator for dual-function AI-based analysis of ECG.
    Liu W; Guo Q; Chen S; Chang S; Wang H; He J; Huang Q
    Front Physiol; 2023; 14():1079503. PubMed ID: 36814476
    [TBL] [Abstract][Full Text] [Related]  

  • 19. BioThreads: a novel VLIW-based chip multiprocessor for accelerating biomedical image processing applications.
    Stevens D; Chouliaras V; Azorin-Peris V; Zheng J; Echiadis A; Hu S
    IEEE Trans Biomed Circuits Syst; 2012 Jun; 6(3):257-68. PubMed ID: 23853147
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Icarust, a real-time simulator for Oxford Nanopore adaptive sampling.
    Munro R; Wibowo S; Payne A; Loose M
    Bioinformatics; 2024 Mar; 40(4):. PubMed ID: 38478392
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.