These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
194 related articles for article (PubMed ID: 37405984)
1. Integrative modeling of diverse protein-peptide systems using CABS-dock. Puławski W; Koliński A; Koliński M PLoS Comput Biol; 2023 Jul; 19(7):e1011275. PubMed ID: 37405984 [TBL] [Abstract][Full Text] [Related]
2. Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible docking. Blaszczyk M; Kurcinski M; Kouza M; Wieteska L; Debinski A; Kolinski A; Kmiecik S Methods; 2016 Jan; 93():72-83. PubMed ID: 26165956 [TBL] [Abstract][Full Text] [Related]
3. Highly Flexible Protein-Peptide Docking Using CABS-Dock. Ciemny MP; Kurcinski M; Kozak KJ; Kolinski A; Kmiecik S Methods Mol Biol; 2017; 1561():69-94. PubMed ID: 28236234 [TBL] [Abstract][Full Text] [Related]
4. Multiscale Modeling of Amyloid Fibrils Formed by Aggregating Peptides Derived from the Amyloidogenic Fragment of the A-Chain of Insulin. Koliński M; Dec R; Dzwolak W Int J Mol Sci; 2021 Nov; 22(22):. PubMed ID: 34830214 [TBL] [Abstract][Full Text] [Related]
5. CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site. Kurcinski M; Jamroz M; Blaszczyk M; Kolinski A; Kmiecik S Nucleic Acids Res; 2015 Jul; 43(W1):W419-24. PubMed ID: 25943545 [TBL] [Abstract][Full Text] [Related]
6. A protocol for CABS-dock protein-peptide docking driven by side-chain contact information. Kurcinski M; Blaszczyk M; Ciemny MP; Kolinski A; Kmiecik S Biomed Eng Online; 2017 Aug; 16(Suppl 1):73. PubMed ID: 28830545 [TBL] [Abstract][Full Text] [Related]
7. Flexible docking of peptides to proteins using CABS-dock. Kurcinski M; Badaczewska-Dawid A; Kolinski M; Kolinski A; Kmiecik S Protein Sci; 2020 Jan; 29(1):211-222. PubMed ID: 31682301 [TBL] [Abstract][Full Text] [Related]
8. Molecular Dynamics Scoring of Protein-Peptide Models Derived from Coarse-Grained Docking. Zalewski M; Kmiecik S; Koliński M Molecules; 2021 May; 26(11):. PubMed ID: 34070778 [TBL] [Abstract][Full Text] [Related]
9. Protein-peptide docking using CABS-dock and contact information. Blaszczyk M; Ciemny MP; Kolinski A; Kurcinski M; Kmiecik S Brief Bioinform; 2019 Nov; 20(6):2299-2305. PubMed ID: 30247502 [TBL] [Abstract][Full Text] [Related]
10. Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinement. Badaczewska-Dawid AE; Kmiecik S; Koliński M Brief Bioinform; 2021 May; 22(3):. PubMed ID: 32520310 [TBL] [Abstract][Full Text] [Related]
11. Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force Fields. Ciemny MP; Badaczewska-Dawid AE; Pikuzinska M; Kolinski A; Kmiecik S Int J Mol Sci; 2019 Jan; 20(3):. PubMed ID: 30708941 [TBL] [Abstract][Full Text] [Related]
12. CABS-dock standalone: a toolbox for flexible protein-peptide docking. Kurcinski M; Pawel Ciemny M; Oleniecki T; Kuriata A; Badaczewska-Dawid AE; Kolinski A; Kmiecik S Bioinformatics; 2019 Oct; 35(20):4170-4172. PubMed ID: 30865258 [TBL] [Abstract][Full Text] [Related]
13. Coarse-Grained Modeling of Peptide Docking Associated with Large Conformation Transitions of the Binding Protein: Troponin I Fragment-Troponin C System. Wabik J; Kurcinski M; Kolinski A Molecules; 2015 Jun; 20(6):10763-80. PubMed ID: 26111167 [TBL] [Abstract][Full Text] [Related]
14. Protocols for All-Atom Reconstruction and High-Resolution Refinement of Protein-Peptide Complex Structures. Badaczewska-Dawid AE; Khramushin A; Kolinski A; Schueler-Furman O; Kmiecik S Methods Mol Biol; 2020; 2165():273-287. PubMed ID: 32621231 [TBL] [Abstract][Full Text] [Related]
15. One-Dimensional Structural Properties of Proteins in the Coarse-Grained CABS Model. Kmiecik S; Kolinski A Methods Mol Biol; 2017; 1484():83-113. PubMed ID: 27787822 [TBL] [Abstract][Full Text] [Related]
16. Coarse-Grained Simulations of Membrane Insertion and Folding of Small Helical Proteins Using the CABS Model. Pulawski W; Jamroz M; Kolinski M; Kolinski A; Kmiecik S J Chem Inf Model; 2016 Nov; 56(11):2207-2215. PubMed ID: 27775349 [TBL] [Abstract][Full Text] [Related]
17. Exploring protein functions from structural flexibility using CABS-flex modeling. Nithin C; Fornari RP; Pilla SP; Wroblewski K; Zalewski M; Madaj R; Kolinski A; Macnar JM; Kmiecik S Protein Sci; 2024 Sep; 33(9):e5090. PubMed ID: 39194135 [TBL] [Abstract][Full Text] [Related]
18. Modeling EphB4-EphrinB2 protein-protein interaction using flexible docking of a short linear motif. Ciemny MP; Kurcinski M; Blaszczyk M; Kolinski A; Kmiecik S Biomed Eng Online; 2017 Aug; 16(Suppl 1):71. PubMed ID: 28830442 [TBL] [Abstract][Full Text] [Related]
19. BiPPred: Combined sequence- and structure-based prediction of peptide binding to the Hsp70 chaperone BiP. Schneider M; Rosam M; Glaser M; Patronov A; Shah H; Back KC; Daake MA; Buchner J; Antes I Proteins; 2016 Oct; 84(10):1390-407. PubMed ID: 27287023 [TBL] [Abstract][Full Text] [Related]
20. BP-Dock: a flexible docking scheme for exploring protein-ligand interactions based on unbound structures. Bolia A; Gerek ZN; Ozkan SB J Chem Inf Model; 2014 Mar; 54(3):913-25. PubMed ID: 24380381 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]