144 related articles for article (PubMed ID: 37418367)
1. RNA structural probing of guanine and uracil nucleotides in yeast.
Xiao K; Ghalei H; Khoshnevis S
PLoS One; 2023; 18(7):e0288070. PubMed ID: 37418367
[TBL] [Abstract][Full Text] [Related]
2. In vivo RNA structural probing of uracil and guanine base-pairing by 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC).
Mitchell D; Renda AJ; Douds CA; Babitzke P; Assmann SM; Bevilacqua PC
RNA; 2019 Jan; 25(1):147-157. PubMed ID: 30341176
[TBL] [Abstract][Full Text] [Related]
3. Carbodiimide reagents for the chemical probing of RNA structure in cells.
Wang PY; Sexton AN; Culligan WJ; Simon MD
RNA; 2019 Jan; 25(1):135-146. PubMed ID: 30389828
[TBL] [Abstract][Full Text] [Related]
4. A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS.
Douds CA; Babitzke P; Bevilacqua PC
RNA; 2024 Jun; 30(7):901-919. PubMed ID: 38670632
[TBL] [Abstract][Full Text] [Related]
5. Mutation signature filtering enables high-fidelity RNA structure probing at all four nucleobases with DMS.
Mitchell D; Cotter J; Saleem I; Mustoe AM
Nucleic Acids Res; 2023 Sep; 51(16):8744-8757. PubMed ID: 37334863
[TBL] [Abstract][Full Text] [Related]
6. Glyoxals as in vivo RNA structural probes of guanine base-pairing.
Mitchell D; Ritchey LE; Park H; Babitzke P; Assmann SM; Bevilacqua PC
RNA; 2018 Jan; 24(1):114-124. PubMed ID: 29030489
[TBL] [Abstract][Full Text] [Related]
7. RNA Secondary Structure Study by Chemical Probing Methods Using DMS and CMCT.
Alghoul F; Eriani G; Martin F
Methods Mol Biol; 2021; 2300():241-250. PubMed ID: 33792883
[TBL] [Abstract][Full Text] [Related]
8. Direct probing of RNA structures and RNA-protein interactions in the HIV-1 packaging signal by chemical modification and electrospray ionization fourier transform mass spectrometry.
Yu E; Fabris D
J Mol Biol; 2003 Jul; 330(2):211-23. PubMed ID: 12823962
[TBL] [Abstract][Full Text] [Related]
9. The interplay between molecular flexibility and RNA chemical probing reactivities analyzed at the nucleotide level via an extensive molecular dynamics study.
Frezza E; Courban A; Allouche D; Sargueil B; Pasquali S
Methods; 2019 Jun; 162-163():108-127. PubMed ID: 31145972
[TBL] [Abstract][Full Text] [Related]
10. Mapping RNA structure in vitro using nucleobase-specific probes.
Sachsenmaier N; Handl S; Debeljak F; Waldsich C
Methods Mol Biol; 2014; 1086():79-94. PubMed ID: 24136599
[TBL] [Abstract][Full Text] [Related]
11. RNA Remodeling by RNA Chaperones Monitored by RNA Structure Probing.
Friedrich S; Schmidt T; Behrens SE
Methods Mol Biol; 2020; 2106():179-192. PubMed ID: 31889258
[TBL] [Abstract][Full Text] [Related]
12. Structure analysis of the 5' external transcribed spacer of the precursor ribosomal RNA from Saccharomyces cerevisiae.
Yeh LC; Lee JC
J Mol Biol; 1992 Dec; 228(3):827-39. PubMed ID: 1469716
[TBL] [Abstract][Full Text] [Related]
13. THE CALCULATED COMPOSITION OF NEWLY SYNTHESIZED YEAST RIBONUCLEIC ACID.
KITAZUME Y; YCAS M
Biochim Biophys Acta; 1963 Nov; 76():391-400. PubMed ID: 14097401
[No Abstract] [Full Text] [Related]
14. Comparative analyses of the secondary structures of synthetic and intracellular yeast MFA2 mRNAs.
Doktycz MJ; Larimer FW; Pastrnak M; Stevens A
Proc Natl Acad Sci U S A; 1998 Dec; 95(25):14614-21. PubMed ID: 9843938
[TBL] [Abstract][Full Text] [Related]
15. Mutation signature filtering enables high-fidelity RNA structure probing at all four nucleobases with DMS.
Mitchell D; Cotter J; Saleem I; Mustoe AM
bioRxiv; 2023 Apr; ():. PubMed ID: 37090560
[TBL] [Abstract][Full Text] [Related]
16. Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension.
Moazed D; Stern S; Noller HF
J Mol Biol; 1986 Feb; 187(3):399-416. PubMed ID: 2422386
[TBL] [Abstract][Full Text] [Related]
17. BASE COMPOSITION OF HIGH MOLECULAR WEIGHT NUCLEAR RNA OF WALKER TUMOR AND LIVER OF THE RAT.
OKAMURA N; BUSCH H
Cancer Res; 1965 Jun; 25():693-7. PubMed ID: 14347555
[No Abstract] [Full Text] [Related]
18. RNA Structure Analysis by Chemical Probing with DMS and CMCT.
Andrade JM; Dos Santos RF; Arraiano CM
Methods Mol Biol; 2020; 2106():209-223. PubMed ID: 31889260
[TBL] [Abstract][Full Text] [Related]
19. Initial stages of the thermal unfolding of yeast phenylalanine transfer RNA as studied by chemical modification: the effect of magnesium.
Rhodes D
Eur J Biochem; 1977 Nov; 81(1):91-101. PubMed ID: 412674
[TBL] [Abstract][Full Text] [Related]
20. Chemical Probing of RNA Structure In Vivo Using SHAPE-MaP and DMS-MaP.
Saha K; Ghosh G
Methods Mol Biol; 2023; 2666():81-93. PubMed ID: 37166658
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]