BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

135 related articles for article (PubMed ID: 37463622)

  • 1. ReCom: A semi-supervised approach to ultra-tolerant database search for improved identification of modified peptides.
    Laguillo-Gómez A; Calvo E; Martín-Cófreces N; Lozano-Prieto M; Sánchez-Madrid F; Vázquez J
    J Proteomics; 2023 Sep; 287():104968. PubMed ID: 37463622
    [TBL] [Abstract][Full Text] [Related]  

  • 2. AA_stat: Intelligent profiling of in vivo and in vitro modifications from open search results.
    Levitsky LI; Bubis JA; Gorshkov MV; Tarasova IA
    J Proteomics; 2021 Sep; 248():104350. PubMed ID: 34389500
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PIPI2: Sensitive Tag-Based Database Search to Identify Peptides with Multiple Post-translational Modifications.
    Lai S; Zhao P; Zhou C; Li N; Yu W
    J Proteome Res; 2024 Jun; 23(6):1960-1969. PubMed ID: 38770571
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Unrestrictive identification of multiple post-translational modifications from tandem mass spectrometry using an error-tolerant algorithm based on an extended sequence tag approach.
    Na S; Jeong J; Park H; Lee KJ; Paek E
    Mol Cell Proteomics; 2008 Dec; 7(12):2452-63. PubMed ID: 18701446
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PIPI: PTM-Invariant Peptide Identification Using Coding Method.
    Yu F; Li N; Yu W
    J Proteome Res; 2016 Dec; 15(12):4423-4435. PubMed ID: 27748123
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Software eyes for protein post-translational modifications.
    Na S; Paek E
    Mass Spectrom Rev; 2015; 34(2):133-47. PubMed ID: 24889695
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Hunting for unexpected post-translational modifications by spectral library searching with tier-wise scoring.
    Ma CW; Lam H
    J Proteome Res; 2014 May; 13(5):2262-71. PubMed ID: 24661115
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Analysis of Tandem Mass Spectrometry Data with CONGA: Combining Open and Narrow Searches with Group-Wise Analysis.
    Freestone J; Noble WS; Keich U
    J Proteome Res; 2024 Jun; 23(6):1894-1906. PubMed ID: 38652578
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PTMSearchPlus: software tool for automated protein identification and post-translational modification characterization by integrating accurate intact protein mass and bottom-up mass spectrometric data searches.
    Kertesz V; Connelly HM; Erickson BK; Hettich RL
    Anal Chem; 2009 Oct; 81(20):8387-95. PubMed ID: 19775152
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PTMTreeSearch: a novel two-stage tree-search algorithm with pruning rules for the identification of post-translational modification of proteins in MS/MS spectra.
    Kertész-Farkas A; Reiz B; Vera R; Myers MP; Pongor S
    Bioinformatics; 2014 Jan; 30(2):234-41. PubMed ID: 24215026
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Identification of Unexpected Protein Modifications by Mass Spectrometry-Based Proteomics.
    Ahmadi S; Winter D
    Methods Mol Biol; 2019; 1871():225-251. PubMed ID: 30276743
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PeaksPTM: Mass spectrometry-based identification of peptides with unspecified modifications.
    Han X; He L; Xin L; Shan B; Ma B
    J Proteome Res; 2011 Jul; 10(7):2930-6. PubMed ID: 21609001
    [TBL] [Abstract][Full Text] [Related]  

  • 13. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
    Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
    J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ISPTM: an iterative search algorithm for systematic identification of post-translational modifications from complex proteome mixtures.
    Huang X; Huang L; Peng H; Guru A; Xue W; Hong SY; Liu M; Sharma S; Fu K; Caprez AP; Swanson DR; Zhang Z; Ding SJ
    J Proteome Res; 2013 Sep; 12(9):3831-42. PubMed ID: 23919725
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The spectral networks paradigm in high throughput mass spectrometry.
    Guthals A; Watrous JD; Dorrestein PC; Bandeira N
    Mol Biosyst; 2012 Oct; 8(10):2535-44. PubMed ID: 22610447
    [TBL] [Abstract][Full Text] [Related]  

  • 16. PTMiner: Localization and Quality Control of Protein Modifications Detected in an Open Search and Its Application to Comprehensive Post-translational Modification Characterization in Human Proteome.
    An Z; Zhai L; Ying W; Qian X; Gong F; Tan M; Fu Y
    Mol Cell Proteomics; 2019 Feb; 18(2):391-405. PubMed ID: 30420486
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An accurate and efficient algorithm for Peptide and ptm identification by tandem mass spectrometry.
    Ning K; Ng HK; Leong HW
    Genome Inform; 2007; 19():119-30. PubMed ID: 18546510
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identification of post-translational modifications via blind search of mass-spectra.
    Tsur D; Tanner S; Zandi E; Bafna V; Pevzner PA
    Proc IEEE Comput Syst Bioinform Conf; 2005; ():157-66. PubMed ID: 16447973
    [TBL] [Abstract][Full Text] [Related]  

  • 19. In-gel protein digestion using acidic methanol produces a highly selective methylation of glutamic acid residues.
    Lozano-Prieto M; Camafeita E; Jorge I; Laguillo-Gómez A; Barrero-Rodríguez R; Devesa CA; Pertusa C; Calvo E; Sánchez-Madrid F; Vázquez J; Martin-Cofreces NB
    J Proteomics; 2024 Jun; 304():105229. PubMed ID: 38880355
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Understanding the Limit of Open Search in the Identification of Peptides With Post-translational Modifications - A Simulation-Based Study.
    Dai J; Yu F; Zhou C; Yu W
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2884-2890. PubMed ID: 32356758
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.