BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

216 related articles for article (PubMed ID: 37498545)

  • 1. IFF: Identifying key residues in intrinsically disordered regions of proteins using machine learning.
    Ho WL; Huang HC; Huang JR
    Protein Sci; 2023 Sep; 32(9):e4739. PubMed ID: 37498545
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Discovering molecular features of intrinsically disordered regions by using evolution for contrastive learning.
    Lu AX; Lu AX; Pritišanac I; Zarin T; Forman-Kay JD; Moses AM
    PLoS Comput Biol; 2022 Jun; 18(6):e1010238. PubMed ID: 35767567
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The return of the rings: Evolutionary convergence of aromatic residues in the intrinsically disordered regions of RNA-binding proteins for liquid-liquid phase separation.
    Ho WL; Huang JR
    Protein Sci; 2022 May; 31(5):e4317. PubMed ID: 35481633
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TransDFL: Identification of Disordered Flexible Linkers in Proteins by Transfer Learning.
    Pang Y; Liu B
    Genomics Proteomics Bioinformatics; 2023 Apr; 21(2):359-369. PubMed ID: 36272675
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Functional Tuning of Intrinsically Disordered Regions in Human Proteins by Composition Bias.
    Kastano K; Mier P; Dosztányi Z; Promponas VJ; Andrade-Navarro MA
    Biomolecules; 2022 Oct; 12(10):. PubMed ID: 36291695
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Towards Decoding the Sequence-Based Grammar Governing the Functions of Intrinsically Disordered Protein Regions.
    Chong S; Mir M
    J Mol Biol; 2021 Jun; 433(12):166724. PubMed ID: 33248138
    [TBL] [Abstract][Full Text] [Related]  

  • 7. OPAL+: Length-Specific MoRF Prediction in Intrinsically Disordered Protein Sequences.
    Sharma R; Sharma A; Raicar G; Tsunoda T; Patil A
    Proteomics; 2019 Mar; 19(6):e1800058. PubMed ID: 30324701
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Conformational ensembles of the human intrinsically disordered proteome.
    Tesei G; Trolle AI; Jonsson N; Betz J; Knudsen FE; Pesce F; Johansson KE; Lindorff-Larsen K
    Nature; 2024 Feb; 626(8000):897-904. PubMed ID: 38297118
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Sequence-to-Conformation Relationships of Disordered Regions Tethered to Folded Domains of Proteins.
    Mittal A; Holehouse AS; Cohan MC; Pappu RV
    J Mol Biol; 2018 Aug; 430(16):2403-2421. PubMed ID: 29763584
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Sequence conservation of protein binding segments in intrinsically disordered regions.
    Ota H; Fukuchi S
    Biochem Biophys Res Commun; 2017 Dec; 494(3-4):602-607. PubMed ID: 29066345
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Prediction of protein-protein interactions using sequences of intrinsically disordered regions.
    Kibar G; Vingron M
    Proteins; 2023 Jul; 91(7):980-990. PubMed ID: 36908253
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Current Stage and Future Perspectives for Homology Modeling, Molecular Dynamics Simulations, Machine Learning with Molecular Dynamics, and Quantum Computing for Intrinsically Disordered Proteins and Proteins with Intrinsically Disordered Regions.
    Coskuner-Weber O; Uversky VN
    Curr Protein Pept Sci; 2024; 25(2):163-171. PubMed ID: 38275091
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Computational Methods to Predict Intrinsically Disordered Regions and Functional Regions in Them.
    Anbo H; Ota M; Fukuchi S
    Methods Mol Biol; 2023; 2627():231-245. PubMed ID: 36959451
    [TBL] [Abstract][Full Text] [Related]  

  • 14. On the Potential of Machine Learning to Examine the Relationship Between Sequence, Structure, Dynamics and Function of Intrinsically Disordered Proteins.
    Lindorff-Larsen K; Kragelund BB
    J Mol Biol; 2021 Oct; 433(20):167196. PubMed ID: 34390736
    [TBL] [Abstract][Full Text] [Related]  

  • 15. IDRMutPred: predicting disease-associated germline nonsynonymous single nucleotide variants (nsSNVs) in intrinsically disordered regions.
    Zhou JB; Xiong Y; An K; Ye ZQ; Wu YD
    Bioinformatics; 2020 Dec; 36(20):4977-4983. PubMed ID: 32756939
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Protein kinases phosphorylate long disordered regions in intrinsically disordered proteins.
    Koike R; Amano M; Kaibuchi K; Ota M
    Protein Sci; 2020 Feb; 29(2):564-571. PubMed ID: 31724233
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Intrinsically disordered sequences enable modulation of protein phase separation through distributed tyrosine motifs.
    Lin Y; Currie SL; Rosen MK
    J Biol Chem; 2017 Nov; 292(46):19110-19120. PubMed ID: 28924037
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Do sequence neighbours of intrinsically disordered regions promote structural flexibility in intrinsically disordered proteins?
    Basu S; Bahadur RP
    J Struct Biol; 2020 Feb; 209(2):107428. PubMed ID: 31756456
    [TBL] [Abstract][Full Text] [Related]  

  • 19. cnnAlpha: Protein disordered regions prediction by reduced amino acid alphabets and convolutional neural networks.
    Oberti M; Vaisman II
    Proteins; 2020 Nov; 88(11):1472-1481. PubMed ID: 32535960
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Protein Regulation by Intrinsically Disordered Regions: A Role for Subdomains in the IDR of the HIV-1 Rev Protein.
    Faust O; Grunhaus D; Shimshon O; Yavin E; Friedler A
    Chembiochem; 2018 Aug; 19(15):1618-1624. PubMed ID: 29791766
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.