These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

188 related articles for article (PubMed ID: 37507643)

  • 1. A Review of Web-Based Metagenomics Platforms for Analysing Next-Generation Sequence Data.
    Achudhan AB; Kannan P; Gupta A; Saleena LM
    Biochem Genet; 2024 Apr; 62(2):621-632. PubMed ID: 37507643
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Web Resources for Metagenomics Studies.
    Dudhagara P; Bhavsar S; Bhagat C; Ghelani A; Bhatt S; Patel R
    Genomics Proteomics Bioinformatics; 2015 Oct; 13(5):296-303. PubMed ID: 26602607
    [TBL] [Abstract][Full Text] [Related]  

  • 3. IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring.
    Kalantar KL; Carvalho T; de Bourcy CFA; Dimitrov B; Dingle G; Egger R; Han J; Holmes OB; Juan YF; King R; Kislyuk A; Lin MF; Mariano M; Morse T; Reynoso LV; Cruz DR; Sheu J; Tang J; Wang J; Zhang MA; Zhong E; Ahyong V; Lay S; Chea S; Bohl JA; Manning JE; Tato CM; DeRisi JL
    Gigascience; 2020 Oct; 9(10):. PubMed ID: 33057676
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
    Keegan KP; Glass EM; Meyer F
    Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Bioinformatics for NGS-based metagenomics and the application to biogas research.
    Jünemann S; Kleinbölting N; Jaenicke S; Henke C; Hassa J; Nelkner J; Stolze Y; Albaum SP; Schlüter A; Goesmann A; Sczyrba A; Stoye J
    J Biotechnol; 2017 Nov; 261():10-23. PubMed ID: 28823476
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics.
    Kushwaha SK; Manoharan L; Meerupati T; Hedlund K; Ahrén D
    BMC Bioinformatics; 2015 Feb; 16(1):65. PubMed ID: 25880302
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CSI NGS Portal: An Online Platform for Automated NGS Data Analysis and Sharing.
    An O; Tan KT; Li Y; Li J; Wu CS; Zhang B; Chen L; Yang H
    Int J Mol Sci; 2020 May; 21(11):. PubMed ID: 32481589
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Interactive Web-Based Services for Metagenomic Data Analysis and Comparisons.
    Abdelsalam NA; Elshora H; El-Hadidi M
    Methods Mol Biol; 2023; 2649():133-174. PubMed ID: 37258861
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A-GAME: improving the assembly of pooled functional metagenomics sequence data.
    Chiara M; Placido A; Picardi E; Ceci LR; Horner DS; Pesole G
    BMC Genomics; 2018 Jan; 19(1):44. PubMed ID: 29329522
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Practical considerations for sampling and data analysis in contemporary metagenomics-based environmental studies.
    Staley C; Sadowsky MJ
    J Microbiol Methods; 2018 Nov; 154():14-18. PubMed ID: 30287354
    [TBL] [Abstract][Full Text] [Related]  

  • 11. HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): a specific and comprehensive pipeline for metagenomic shotgun sequencing data analysis.
    Ferravante C; Memoli D; Palumbo D; Ciaramella P; Di Loria A; D'Agostino Y; Nassa G; Rizzo F; Tarallo R; Weisz A; Giurato G
    BMC Bioinformatics; 2021 Jul; 22(Suppl 7):106. PubMed ID: 34225648
    [TBL] [Abstract][Full Text] [Related]  

  • 12. [A review on the bioinformatics pipelines for metagenomic research].
    Ye DD; Fan MM; Guan Q; Chen HJ; Ma ZS
    Dongwuxue Yanjiu; 2012 Dec; 33(6):574-85. PubMed ID: 23266976
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A bioinformatics pipeline integrating predictive metagenomics profiling for the analysis of 16S rDNA/rRNA sequencing data originated from foods.
    Mataragas M; Alessandria V; Ferrocino I; Rantsiou K; Cocolin L
    Food Microbiol; 2018 Dec; 76():279-286. PubMed ID: 30166151
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework.
    Mehta S; Crane M; Leith E; Batut B; Hiltemann S; Arntzen MØ; Kunath BJ; Pope PB; Delogu F; Sajulga R; Kumar P; Johnson JE; Griffin TJ; Jagtap PD
    F1000Res; 2021; 10():103. PubMed ID: 34484688
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A metagenomics portal for a democratized sequencing world.
    Wilke A; Glass EM; Bartels D; Bischof J; Braithwaite D; D'Souza M; Gerlach W; Harrison T; Keegan K; Matthews H; Kottmann R; Paczian T; Tang W; Trimble WL; Yilmaz P; Wilkening J; Desai N; Meyer F
    Methods Enzymol; 2013; 531():487-523. PubMed ID: 24060134
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Orione, a web-based framework for NGS analysis in microbiology.
    Cuccuru G; Orsini M; Pinna A; Sbardellati A; Soranzo N; Travaglione A; Uva P; Zanetti G; Fotia G
    Bioinformatics; 2014 Jul; 30(13):1928-9. PubMed ID: 24618473
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Practical evaluation of 11 de novo assemblers in metagenome assembly.
    Forouzan E; Shariati P; Mousavi Maleki MS; Karkhane AA; Yakhchali B
    J Microbiol Methods; 2018 Aug; 151():99-105. PubMed ID: 29953874
    [TBL] [Abstract][Full Text] [Related]  

  • 18. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.
    Bose T; Haque MM; Reddy C; Mande SS
    PLoS One; 2015; 10(11):e0142102. PubMed ID: 26561344
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Metagenomics using next-generation sequencing.
    Bragg L; Tyson GW
    Methods Mol Biol; 2014; 1096():183-201. PubMed ID: 24515370
    [TBL] [Abstract][Full Text] [Related]  

  • 20. COMAN: a web server for comprehensive metatranscriptomics analysis.
    Ni Y; Li J; Panagiotou G
    BMC Genomics; 2016 Aug; 17(1):622. PubMed ID: 27515514
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.