BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

169 related articles for article (PubMed ID: 37533432)

  • 1. TRcaller: a novel tool for precise and ultrafast tandem repeat variant genotyping in massively parallel sequencing reads.
    Wang X; Huang M; Budowle B; Ge J
    Front Genet; 2023; 14():1227176. PubMed ID: 37533432
    [TBL] [Abstract][Full Text] [Related]  

  • 2. USAT: a bioinformatic toolkit to facilitate interpretation and comparative visualization of tandem repeat sequences.
    Wang X; Budowle B; Ge J
    BMC Bioinformatics; 2022 Nov; 23(1):497. PubMed ID: 36402991
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A complete pipeline enables haplotyping and phasing macrohaplotype in long sequencing reads for polyploidy samples and a multi-source DNA mixture.
    Wang X; Muenzler M; King J; Liu M; Li H; Budowle B; Ge J
    Electrophoresis; 2024 May; 45(9-10):877-884. PubMed ID: 38196015
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Profiling of Short-Tandem-Repeat Disease Alleles in 12,632 Human Whole Genomes.
    Tang H; Kirkness EF; Lippert C; Biggs WH; Fabani M; Guzman E; Ramakrishnan S; Lavrenko V; Kakaradov B; Hou C; Hicks B; Heckerman D; Och FJ; Caskey CT; Venter JC; Telenti A
    Am J Hum Genet; 2017 Nov; 101(5):700-715. PubMed ID: 29100084
    [TBL] [Abstract][Full Text] [Related]  

  • 5. toaSTR: A web application for forensic STR genotyping by massively parallel sequencing.
    Ganschow S; Silvery J; Kalinowski J; Tiemann C
    Forensic Sci Int Genet; 2018 Nov; 37():21-28. PubMed ID: 30071493
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Dante: genotyping of known complex and expanded short tandem repeats.
    Budiš J; Kucharík M; Ďuriš F; Gazdarica J; Zrubcová M; Ficek A; Szemes T; Brejová B; Radvanszky J
    Bioinformatics; 2019 Apr; 35(8):1310-1317. PubMed ID: 30203023
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Short-read, high-throughput sequencing technology for STR genotyping.
    Bornman DM; Hester ME; Schuetter JM; Kasoji MD; Minard-Smith A; Barden CA; Nelson SC; Godbold GD; Baker CH; Yang B; Walther JE; Tornes IE; Yan PS; Rodriguez B; Bundschuh R; Dickens ML; Young BA; Faith SA
    Biotech Rapid Dispatches; 2012 Apr; 2012():1-6. PubMed ID: 25621315
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Profiling the genome-wide landscape of tandem repeat expansions.
    Mousavi N; Shleizer-Burko S; Yanicky R; Gymrek M
    Nucleic Acids Res; 2019 Sep; 47(15):e90. PubMed ID: 31194863
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Use of the LUS in sequence allele designations to facilitate probabilistic genotyping of NGS-based STR typing results.
    Just RS; Irwin JA
    Forensic Sci Int Genet; 2018 May; 34():197-205. PubMed ID: 29525576
    [TBL] [Abstract][Full Text] [Related]  

  • 10. lobSTR: A short tandem repeat profiler for personal genomes.
    Gymrek M; Golan D; Rosset S; Erlich Y
    Genome Res; 2012 Jun; 22(6):1154-62. PubMed ID: 22522390
    [TBL] [Abstract][Full Text] [Related]  

  • 11. REViewer: haplotype-resolved visualization of read alignments in and around tandem repeats.
    Dolzhenko E; Weisburd B; Ibañez K; Rajan-Babu IS; Anyansi C; Bennett MF; Billingsley K; Carroll A; Clamons S; Danzi MC; Deshpande V; Ding J; Fazal S; Halman A; Jadhav B; Qiu Y; Richmond PA; Saunders CT; Scheffler K; van Vugt JJFA; Zwamborn RRAJ; ; Chong SS; Friedman JM; Tucci A; Rehm HL; Eberle MA
    Genome Med; 2022 Aug; 14(1):84. PubMed ID: 35948990
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences.
    Chiu R; Rajan-Babu IS; Friedman JM; Birol I
    Genome Biol; 2021 Aug; 22(1):224. PubMed ID: 34389037
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SEQ Mapper: A DNA sequence searching tool for massively parallel sequencing data.
    Lee JC; Tseng B; Chang LK; Linacre A
    Forensic Sci Int Genet; 2017 Jan; 26():66-69. PubMed ID: 27792894
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ReviSTER: an automated pipeline to revise misaligned reads to simple tandem repeats.
    Tae H; McMahon KW; Settlage RE; Bavarva JH; Garner HR
    Bioinformatics; 2013 Jul; 29(14):1734-41. PubMed ID: 23677944
    [TBL] [Abstract][Full Text] [Related]  

  • 15. UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing.
    Park DJ; Li R; Lau E; Georgeson P; Nguyen-Dumont T; Pope BJ
    BMC Bioinformatics; 2016 Apr; 17():165. PubMed ID: 27083325
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Performance and concordance of the ForenSeq™ system for autosomal and Y chromosome short tandem repeat sequencing of reference-type specimens.
    Just RS; Moreno LI; Smerick JB; Irwin JA
    Forensic Sci Int Genet; 2017 May; 28():1-9. PubMed ID: 28126691
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Analysis and comparison of the STR genotypes called with HipSTR, STRait Razor and toaSTR by using next generation sequencing data in a Brazilian population sample.
    Valle-Silva G; Frontanilla TS; Ayala J; Donadi EA; Simões AL; Castelli EC; Mendes-Junior CT
    Forensic Sci Int Genet; 2022 May; 58():102676. PubMed ID: 35144075
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Decomposing mosaic tandem repeats accurately from long reads.
    Masutani B; Kawahara R; Morishita S
    Bioinformatics; 2023 Apr; 39(4):. PubMed ID: 37039842
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Graph Algorithms for Mixture Interpretation.
    Crysup B; Woerner AE; King JL; Budowle B
    Genes (Basel); 2021 Jan; 12(2):. PubMed ID: 33514030
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Insights from a genome-wide truth set of tandem repeat variation.
    Weisburd B; Tiao G; Rehm HL
    bioRxiv; 2023 May; ():. PubMed ID: 37214979
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.