BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

166 related articles for article (PubMed ID: 37537999)

  • 1. Innovation in Cross-Linking Mass Spectrometry Workflows: Toward a Comprehensive, Flexible, and Customizable Data Analysis Platform.
    Nie M; Li H
    J Am Soc Mass Spectrom; 2023 Sep; 34(9):1949-1956. PubMed ID: 37537999
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CLMSVault: A Software Suite for Protein Cross-Linking Mass-Spectrometry Data Analysis and Visualization.
    Courcelles M; Coulombe-Huntington J; Cossette É; Gingras AC; Thibault P; Tyers M
    J Proteome Res; 2017 Jul; 16(7):2645-2652. PubMed ID: 28537071
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A cross-linking/mass spectrometry workflow based on MS-cleavable cross-linkers and the MeroX software for studying protein structures and protein-protein interactions.
    Iacobucci C; Götze M; Ihling CH; Piotrowski C; Arlt C; Schäfer M; Hage C; Schmidt R; Sinz A
    Nat Protoc; 2018 Dec; 13(12):2864-2889. PubMed ID: 30382245
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ECL 3.0: a sensitive peptide identification tool for cross-linking mass spectrometry data analysis.
    Zhou C; Dai S; Lai S; Lin Y; Zhang X; Li N; Yu W
    BMC Bioinformatics; 2023 Sep; 24(1):351. PubMed ID: 37730532
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Quantitative cross-linking/mass spectrometry to elucidate structural changes in proteins and their complexes.
    Chen ZA; Rappsilber J
    Nat Protoc; 2019 Jan; 14(1):171-201. PubMed ID: 30559374
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identification of MS-Cleavable and Noncleavable Chemically Cross-Linked Peptides with MetaMorpheus.
    Lu L; Millikin RJ; Solntsev SK; Rolfs Z; Scalf M; Shortreed MR; Smith LM
    J Proteome Res; 2018 Jul; 17(7):2370-2376. PubMed ID: 29793340
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SIM-XL: A powerful and user-friendly tool for peptide cross-linking analysis.
    Lima DB; de Lima TB; Balbuena TS; Neves-Ferreira AGC; Barbosa VC; Gozzo FC; Carvalho PC
    J Proteomics; 2015 Nov; 129():51-55. PubMed ID: 25638023
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Exploring Spacer Arm Structures for Designs of Asymmetric Sulfoxide-Containing MS-Cleavable Cross-Linkers.
    Yu C; Novitsky EJ; Cheng NW; Rychnovsky SD; Huang L
    Anal Chem; 2020 Apr; 92(8):6026-6033. PubMed ID: 32202417
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Enabling Photoactivated Cross-Linking Mass Spectrometric Analysis of Protein Complexes by Novel MS-Cleavable Cross-Linkers.
    Gutierrez C; Salituro LJ; Yu C; Wang X; DePeter SF; Rychnovsky SD; Huang L
    Mol Cell Proteomics; 2021; 20():100084. PubMed ID: 33915260
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Developing new isotope-coded mass spectrometry-cleavable cross-linkers for elucidating protein structures.
    Yu C; Kandur W; Kao A; Rychnovsky S; Huang L
    Anal Chem; 2014 Feb; 86(4):2099-106. PubMed ID: 24471733
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MS Annika 2.0 Identifies Cross-Linked Peptides in MS2-MS3-Based Workflows at High Sensitivity and Specificity.
    Birklbauer MJ; Matzinger M; Müller F; Mechtler K; Dorfer V
    J Proteome Res; 2023 Sep; 22(9):3009-3021. PubMed ID: 37566781
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes.
    Kao A; Chiu CL; Vellucci D; Yang Y; Patel VR; Guan S; Randall A; Baldi P; Rychnovsky SD; Huang L
    Mol Cell Proteomics; 2011 Jan; 10(1):M110.002212. PubMed ID: 20736410
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Synthesis of two new enrichable and MS-cleavable cross-linkers to define protein-protein interactions by mass spectrometry.
    Burke AM; Kandur W; Novitsky EJ; Kaake RM; Yu C; Kao A; Vellucci D; Huang L; Rychnovsky SD
    Org Biomol Chem; 2015 May; 13(17):5030-7. PubMed ID: 25823605
    [TBL] [Abstract][Full Text] [Related]  

  • 14. High Confidence Identification of Cross-Linked Peptides by an Enrichment-Based Dual Cleavable Cross-Linking Technology and Data Analysis tool Cleave-XL.
    Chakrabarty JK; Sadananda SC; Bhat A; Naik AJ; Ostwal DV; Chowdhury SM
    J Am Soc Mass Spectrom; 2020 Feb; 31(2):173-182. PubMed ID: 32031390
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Identification of Cross-linked Peptides Using Isotopomeric Cross-linkers.
    Luo J; Bassett J; Ranish J
    J Am Soc Mass Spectrom; 2019 Sep; 30(9):1643-1653. PubMed ID: 31168746
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A Workflow for Improved Analysis of Cross-Linking Mass Spectrometry Data Integrating Parallel Accumulation-Serial Fragmentation with MeroX and Skyline.
    Rojas Echeverri JC; Hause F; Iacobucci C; Ihling CH; Tänzler D; Shulman N; Riffle M; MacLean BX; Sinz A
    Anal Chem; 2024 May; 96(19):7373-7379. PubMed ID: 38696819
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Two-Dimensional Fractionation Method for Proteome-Wide Cross-Linking Mass Spectrometry Analysis.
    Jiao F; Yu C; Wheat A; Wang X; Rychnovsky SD; Huang L
    Anal Chem; 2022 Mar; 94(10):4236-4242. PubMed ID: 35235311
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Development of a Novel Sulfoxide-Containing MS-Cleavable Homobifunctional Cysteine-Reactive Cross-Linker for Studying Protein-Protein Interactions.
    Gutierrez CB; Block SA; Yu C; Soohoo SM; Huszagh AS; Rychnovsky SD; Huang L
    Anal Chem; 2018 Jun; 90(12):7600-7607. PubMed ID: 29792801
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Developing an Acidic Residue Reactive and Sulfoxide-Containing MS-Cleavable Homobifunctional Cross-Linker for Probing Protein-Protein Interactions.
    Gutierrez CB; Yu C; Novitsky EJ; Huszagh AS; Rychnovsky SD; Huang L
    Anal Chem; 2016 Aug; 88(16):8315-22. PubMed ID: 27417384
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Integrated Workflow for Structural Proteomics Studies Based on Cross-Linking/Mass Spectrometry with an MS/MS Cleavable Cross-Linker.
    Arlt C; Götze M; Ihling CH; Hage C; Schäfer M; Sinz A
    Anal Chem; 2016 Aug; 88(16):7930-7. PubMed ID: 27428000
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.