These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

243 related articles for article (PubMed ID: 37540425)

  • 21. High Throughput Sequencing-Based Approaches for Gene Expression Analysis.
    Reddy RRS; Ramanujam MV
    Methods Mol Biol; 2018; 1783():299-323. PubMed ID: 29767369
    [TBL] [Abstract][Full Text] [Related]  

  • 22. RNA-Seq methods for transcriptome analysis.
    Hrdlickova R; Toloue M; Tian B
    Wiley Interdiscip Rev RNA; 2017 Jan; 8(1):. PubMed ID: 27198714
    [TBL] [Abstract][Full Text] [Related]  

  • 23. RNA-Seq Data Analysis in Galaxy.
    Batut B; van den Beek M; Doyle MA; Soranzo N
    Methods Mol Biol; 2021; 2284():367-392. PubMed ID: 33835453
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Variant analysis pipeline for accurate detection of genomic variants from transcriptome sequencing data.
    Adetunji MO; Lamont SJ; Abasht B; Schmidt CJ
    PLoS One; 2019; 14(9):e0216838. PubMed ID: 31545812
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Transcript Profiling Using Long-Read Sequencing Technologies.
    Bayega A; Wang YC; Oikonomopoulos S; Djambazian H; Fahiminiya S; Ragoussis J
    Methods Mol Biol; 2018; 1783():121-147. PubMed ID: 29767360
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data.
    Blumenkamp P; Pfister M; Diedrich S; Brinkrolf K; Jaenicke S; Goesmann A
    BMC Bioinformatics; 2024 Mar; 25(1):138. PubMed ID: 38553675
    [TBL] [Abstract][Full Text] [Related]  

  • 27. deltaTE: Detection of Translationally Regulated Genes by Integrative Analysis of Ribo-seq and RNA-seq Data.
    Chothani S; Adami E; Ouyang JF; Viswanathan S; Hubner N; Cook SA; Schafer S; Rackham OJL
    Curr Protoc Mol Biol; 2019 Dec; 129(1):e108. PubMed ID: 31763789
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Current and Future Methods for mRNA Analysis: A Drive Toward Single Molecule Sequencing.
    Bayega A; Fahiminiya S; Oikonomopoulos S; Ragoussis J
    Methods Mol Biol; 2018; 1783():209-241. PubMed ID: 29767365
    [TBL] [Abstract][Full Text] [Related]  

  • 29. XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples.
    Harmanci A; Harmanci AS; Klisch TJ; Patel AJ
    BMC Genomics; 2022 Dec; 23(1):841. PubMed ID: 36539717
    [TBL] [Abstract][Full Text] [Related]  

  • 30. An RNA-Seq Data Analysis Pipeline.
    Sengupta S; Azad RK
    Methods Mol Biol; 2024; 2812():1-9. PubMed ID: 39068354
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Transcriptome Sequencing: RNA-Seq.
    Zhang H; He L; Cai L
    Methods Mol Biol; 2018; 1754():15-27. PubMed ID: 29536435
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Using RNA Sequencing to Characterize the Tumor Microenvironment.
    Smith CC; Bixby LM; Miller KL; Selitsky SR; Bortone DS; Hoadley KA; Vincent BG; Serody JS
    Methods Mol Biol; 2020; 2055():245-272. PubMed ID: 31502156
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Sequences to Differences in Gene Expression: Analysis of RNA-Seq Data.
    Pavlovich PV; Cauchy P
    Methods Mol Biol; 2022; 2508():279-318. PubMed ID: 35737247
    [TBL] [Abstract][Full Text] [Related]  

  • 34. VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.
    Cornwell M; Vangala M; Taing L; Herbert Z; Köster J; Li B; Sun H; Li T; Zhang J; Qiu X; Pun M; Jeselsohn R; Brown M; Liu XS; Long HW
    BMC Bioinformatics; 2018 Apr; 19(1):135. PubMed ID: 29649993
    [TBL] [Abstract][Full Text] [Related]  

  • 35. GSAASeqSP: a toolset for gene set association analysis of RNA-Seq data.
    Xiong Q; Mukherjee S; Furey TS
    Sci Rep; 2014 Sep; 4():6347. PubMed ID: 25213199
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Comparison of Gene Expression Profiles in Nonmodel Eukaryotic Organisms with RNA-Seq.
    Cheng H; Wang Y; Sun MA
    Methods Mol Biol; 2018; 1751():3-16. PubMed ID: 29508286
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project.
    Amrit FRG; Ghazi A
    J Vis Exp; 2017 Apr; (122):. PubMed ID: 28448031
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Endothelial Cell RNA-Seq Data: Differential Expression and Functional Enrichment Analyses to Study Phenotypic Switching.
    Pinel GD; Horder JL; King JR; McIntyre A; Mongan NP; López GG; Benest AV
    Methods Mol Biol; 2022; 2441():369-426. PubMed ID: 35099752
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Partitioning RNAs by length improves transcriptome reconstruction from short-read RNA-seq data.
    Ringeling FR; Chakraborty S; Vissers C; Reiman D; Patel AM; Lee KH; Hong A; Park CW; Reska T; Gagneur J; Chang H; Spletter ML; Yoon KJ; Ming GL; Song H; Canzar S
    Nat Biotechnol; 2022 May; 40(5):741-750. PubMed ID: 35013600
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathways.
    Garrido-Rodriguez M; Lopez-Lopez D; Ortuno FM; Peña-Chilet M; Muñoz E; Calzado MA; Dopazo J
    PLoS Comput Biol; 2021 Feb; 17(2):e1008748. PubMed ID: 33571195
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 13.