126 related articles for article (PubMed ID: 37546943)
1. Local Disordered Region Sampling (LDRS) for Ensemble Modeling of Proteins with Experimentally Undetermined or Low Confidence Prediction Segments.
Liu ZH; Teixeira JMC; Zhang O; Tsangaris TE; Li J; Gradinaru CC; Head-Gordon T; Forman-Kay JD
bioRxiv; 2023 Jul; ():. PubMed ID: 37546943
[TBL] [Abstract][Full Text] [Related]
2. Local Disordered Region Sampling (LDRS) for ensemble modeling of proteins with experimentally undetermined or low confidence prediction segments.
Liu ZH; Teixeira JMC; Zhang O; Tsangaris TE; Li J; Gradinaru CC; Head-Gordon T; Forman-Kay JD
Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 38060268
[TBL] [Abstract][Full Text] [Related]
3. IDPConformerGenerator: A Flexible Software Suite for Sampling the Conformational Space of Disordered Protein States.
Teixeira JMC; Liu ZH; Namini A; Li J; Vernon RM; Krzeminski M; Shamandy AA; Zhang O; Haghighatlari M; Yu L; Head-Gordon T; Forman-Kay JD
J Phys Chem A; 2022 Sep; 126(35):5985-6003. PubMed ID: 36030416
[TBL] [Abstract][Full Text] [Related]
4. A Curated Rotamer Library for Common Post-Translational Modifications of Proteins.
Zhang O; Naik SA; Liu ZH; Forman-Kay J; Head-Gordon T
ArXiv; 2024 May; ():. PubMed ID: 38764597
[TBL] [Abstract][Full Text] [Related]
5. DeepIDP-2L: protein intrinsically disordered region prediction by combining convolutional attention network and hierarchical attention network.
Tang YJ; Pang YH; Liu B
Bioinformatics; 2022 Feb; 38(5):1252-1260. PubMed ID: 34864847
[TBL] [Abstract][Full Text] [Related]
6. Protein intrinsically disordered region prediction by combining neural architecture search and multi-objective genetic algorithm.
Tang YJ; Yan K; Zhang X; Tian Y; Liu B
BMC Biol; 2023 Sep; 21(1):188. PubMed ID: 37674132
[TBL] [Abstract][Full Text] [Related]
7. Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank.
Monzon AM; Necci M; Quaglia F; Walsh I; Zanotti G; Piovesan D; Tosatto SCE
Int J Mol Sci; 2020 Jun; 21(12):. PubMed ID: 32599863
[TBL] [Abstract][Full Text] [Related]
8. DIPEND: An Open-Source Pipeline to Generate Ensembles of Disordered Segments Using Neighbor-Dependent Backbone Preferences.
Harmat Z; Dudola D; Gáspári Z
Biomolecules; 2021 Oct; 11(10):. PubMed ID: 34680137
[TBL] [Abstract][Full Text] [Related]
9. Ab initio computational modeling of loops in G-protein-coupled receptors: lessons from the crystal structure of rhodopsin.
Mehler EL; Hassan SA; Kortagere S; Weinstein H
Proteins; 2006 Aug; 64(3):673-90. PubMed ID: 16729264
[TBL] [Abstract][Full Text] [Related]
10. Structural Preferences Shape the Entropic Force of Disordered Protein Ensembles.
Yu F; Sukenik S
J Phys Chem B; 2023 May; 127(19):4235-4244. PubMed ID: 37155239
[TBL] [Abstract][Full Text] [Related]
11. Quantifying Protein Disorder through Measures of Excess Conformational Entropy.
Rajasekaran N; Gopi S; Narayan A; Naganathan AN
J Phys Chem B; 2016 May; 120(19):4341-50. PubMed ID: 27111521
[TBL] [Abstract][Full Text] [Related]
12. Phosphorylation of disordered proteins tunes local and global intramolecular interactions.
Usher ET; Fossat MJ; Holehouse AS
bioRxiv; 2024 Jun; ():. PubMed ID: 38915510
[TBL] [Abstract][Full Text] [Related]
13. Computational modeling suggests binding-induced expansion of Epsin disordered regions upon association with AP2.
Jagannathan NS; Hogue CWV; Tucker-Kellogg L
PLoS Comput Biol; 2021 Jan; 17(1):e1008474. PubMed ID: 33406091
[TBL] [Abstract][Full Text] [Related]
14. A Tale of Loops and Tails: The Role of Intrinsically Disordered Protein Regions in R-Loop Recognition and Phase Separation.
Dettori LG; Torrejon D; Chakraborty A; Dutta A; Mohamed M; Papp C; Kuznetsov VA; Sung P; Feng W; Bah A
Front Mol Biosci; 2021; 8():691694. PubMed ID: 34179096
[TBL] [Abstract][Full Text] [Related]
15. Genome-scale prediction of proteins with long intrinsically disordered regions.
Peng Z; Mizianty MJ; Kurgan L
Proteins; 2014 Jan; 82(1):145-58. PubMed ID: 23798504
[TBL] [Abstract][Full Text] [Related]
16. Structural preferences shape the entropic force of disordered protein ensembles.
Yu F; Sukenik S
bioRxiv; 2023 Jan; ():. PubMed ID: 36711874
[TBL] [Abstract][Full Text] [Related]
17. Fast protein loop sampling and structure prediction using distance-guided sequential chain-growth Monte Carlo method.
Tang K; Zhang J; Liang J
PLoS Comput Biol; 2014 Apr; 10(4):e1003539. PubMed ID: 24763317
[TBL] [Abstract][Full Text] [Related]
18. Folded domain charge properties influence the conformational behavior of disordered tails.
Taneja I; Holehouse AS
Curr Res Struct Biol; 2021; 3():216-228. PubMed ID: 34557680
[TBL] [Abstract][Full Text] [Related]
19. Transferable deep generative modeling of intrinsically disordered protein conformations.
Janson G; Feig M
bioRxiv; 2024 Feb; ():. PubMed ID: 38370653
[TBL] [Abstract][Full Text] [Related]
20. Controlling Structural Bias in Intrinsically Disordered Proteins Using Solution Space Scanning.
Holehouse AS; Sukenik S
J Chem Theory Comput; 2020 Mar; 16(3):1794-1805. PubMed ID: 31999450
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
