These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

203 related articles for article (PubMed ID: 37549063)

  • 1. Enhancing cryo-EM maps with 3D deep generative networks for assisting protein structure modeling.
    Maddhuri Venkata Subramaniya SR; Terashi G; Kihara D
    Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37549063
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Deep Learning for Validating and Estimating Resolution of Cryo-Electron Microscopy Density Maps
    Avramov TK; Vyenielo D; Gomez-Blanco J; Adinarayanan S; Vargas J; Si D
    Molecules; 2019 Mar; 24(6):. PubMed ID: 30917528
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Automatic local resolution-based sharpening of cryo-EM maps.
    Ramírez-Aportela E; Vilas JL; Glukhova A; Melero R; Conesa P; Martínez M; Maluenda D; Mota J; Jiménez A; Vargas J; Marabini R; Sexton PM; Carazo JM; Sorzano COS
    Bioinformatics; 2020 Feb; 36(3):765-772. PubMed ID: 31504163
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Cryo2StructData: A Large Labeled Cryo-EM Density Map Dataset for AI-based Modeling of Protein Structures.
    Giri N; Wang L; Cheng J
    Sci Data; 2024 May; 11(1):458. PubMed ID: 38710720
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein Structure Modeling from Cryo-EM Map Using MAINMAST and MAINMAST-GUI Plugin.
    Terashi G; Zha Y; Kihara D
    Methods Mol Biol; 2020; 2165():317-336. PubMed ID: 32621234
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A fragment based method for modeling of protein segments into cryo-EM density maps.
    Ismer J; Rose AS; Tiemann JKS; Hildebrand PW
    BMC Bioinformatics; 2017 Nov; 18(1):475. PubMed ID: 29132296
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Deep Learning to Predict Protein Backbone Structure from High-Resolution Cryo-EM Density Maps.
    Si D; Moritz SA; Pfab J; Hou J; Cao R; Wang L; Wu T; Cheng J
    Sci Rep; 2020 Mar; 10(1):4282. PubMed ID: 32152330
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Detecting protein and DNA/RNA structures in cryo-EM maps of intermediate resolution using deep learning.
    Wang X; Alnabati E; Aderinwale TW; Maddhuri Venkata Subramaniya SR; Terashi G; Kihara D
    Nat Commun; 2021 Apr; 12(1):2302. PubMed ID: 33863902
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protein secondary structure detection in intermediate-resolution cryo-EM maps using deep learning.
    Maddhuri Venkata Subramaniya SR; Terashi G; Kihara D
    Nat Methods; 2019 Sep; 16(9):911-917. PubMed ID: 31358979
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CR-I-TASSER: assemble protein structures from cryo-EM density maps using deep convolutional neural networks.
    Zhang X; Zhang B; Freddolino PL; Zhang Y
    Nat Methods; 2022 Feb; 19(2):195-204. PubMed ID: 35132244
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Computational methods for constructing protein structure models from 3D electron microscopy maps.
    Esquivel-Rodríguez J; Kihara D
    J Struct Biol; 2013 Oct; 184(1):93-102. PubMed ID: 23796504
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Neural representations of cryo-EM maps and a graph-based interpretation.
    Ranno N; Si D
    BMC Bioinformatics; 2022 Sep; 23(Suppl 3):397. PubMed ID: 36171544
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Three-Dimensional Graph Matching to Identify Secondary Structure Correspondence of Medium-Resolution Cryo-EM Density Maps.
    Behkamal B; Naghibzadeh M; Saberi MR; Tehranizadeh ZA; Pagnani A; Al Nasr K
    Biomolecules; 2021 Nov; 11(12):. PubMed ID: 34944417
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Auto3DCryoMap: an automated particle alignment approach for 3D cryo-EM density map reconstruction.
    Al-Azzawi A; Ouadou A; Duan Y; Cheng J
    BMC Bioinformatics; 2020 Dec; 21(Suppl 21):534. PubMed ID: 33371884
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Auto-DRRAFTER: Automated RNA Modeling Based on Cryo-EM Density.
    Ma H; Pham P; Luo B; Rangan R; Kappel K; Su Z; Das R
    Methods Mol Biol; 2023; 2568():193-211. PubMed ID: 36227570
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CryoRes: Local Resolution Estimation of Cryo-EM Density Maps by Deep Learning.
    Dai M; Dong Z; Xu K; Zhang QC
    J Mol Biol; 2023 May; 435(9):168059. PubMed ID: 36967040
    [TBL] [Abstract][Full Text] [Related]  

  • 17. De novo main-chain modeling for EM maps using MAINMAST.
    Terashi G; Kihara D
    Nat Commun; 2018 Apr; 9(1):1618. PubMed ID: 29691408
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MAINMASTseg: Automated Map Segmentation Method for Cryo-EM Density Maps with Symmetry.
    Terashi G; Kagaya Y; Kihara D
    J Chem Inf Model; 2020 May; 60(5):2634-2643. PubMed ID: 32197044
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Protein-Protein Modeling Using Cryo-EM Restraints.
    Trellet M; van Zundert G; Bonvin AMJJ
    Methods Mol Biol; 2020; 2112():145-162. PubMed ID: 32006284
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A New Protocol for Atomic-Level Protein Structure Modeling and Refinement Using Low-to-Medium Resolution Cryo-EM Density Maps.
    Zhang B; Zhang X; Pearce R; Shen HB; Zhang Y
    J Mol Biol; 2020 Sep; 432(19):5365-5377. PubMed ID: 32771523
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.