These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
4. FiSSE: A simple nonparametric test for the effects of a binary character on lineage diversification rates. Rabosky DL; Goldberg EE Evolution; 2017 Jun; 71(6):1432-1442. PubMed ID: 28316067 [TBL] [Abstract][Full Text] [Related]
5. Deep Learning and Likelihood Approaches for Viral Phylogeography Converge on the Same Answers Whether the Inference Model Is Right or Wrong. Thompson A; Liebeskind BJ; Scully EJ; Landis MJ Syst Biol; 2024 May; 73(1):183-206. PubMed ID: 38189575 [TBL] [Abstract][Full Text] [Related]
7. Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks. Voznica J; Zhukova A; Boskova V; Saulnier E; Lemoine F; Moslonka-Lefebvre M; Gascuel O Nat Commun; 2022 Jul; 13(1):3896. PubMed ID: 35794110 [TBL] [Abstract][Full Text] [Related]
8. Estimating trait-dependent speciation and extinction rates from incompletely resolved phylogenies. FitzJohn RG; Maddison WP; Otto SP Syst Biol; 2009 Dec; 58(6):595-611. PubMed ID: 20525612 [TBL] [Abstract][Full Text] [Related]
9. Time-dependent speciation and extinction from phylogenies: a least squares approach. Paradis E Evolution; 2011 Mar; 65(3):661-72. PubMed ID: 21054360 [TBL] [Abstract][Full Text] [Related]
11. Likelihood inference of non-constant diversification rates with incomplete taxon sampling. Höhna S PLoS One; 2014; 9(1):e84184. PubMed ID: 24400082 [TBL] [Abstract][Full Text] [Related]
12. Robustness of the approximate likelihood of the protracted speciation model. Simonet C; Scherrer R; Rego-Costa A; Etienne RS J Evol Biol; 2018 Mar; 31(3):469-479. PubMed ID: 29274113 [TBL] [Abstract][Full Text] [Related]
13. Additional Analytical Support for a New Method to Compute the Likelihood of Diversification Models. Laudanno G; Haegeman B; Etienne RS Bull Math Biol; 2020 Jan; 82(2):22. PubMed ID: 31970528 [TBL] [Abstract][Full Text] [Related]
14. Artificial neural networks can learn to estimate extinction rates from molecular phylogenies. Bokma F J Theor Biol; 2006 Dec; 243(3):449-54. PubMed ID: 16901508 [TBL] [Abstract][Full Text] [Related]
15. A General and Efficient Algorithm for the Likelihood of Diversification and Discrete-Trait Evolutionary Models. Louca S; Pennell MW Syst Biol; 2020 May; 69(3):545-556. PubMed ID: 31432088 [TBL] [Abstract][Full Text] [Related]
16. Studying speciation and extinction dynamics from phylogenies: addressing identifiability issues. Morlon H; Robin S; Hartig F Trends Ecol Evol; 2022 Jun; 37(6):497-506. PubMed ID: 35246322 [TBL] [Abstract][Full Text] [Related]
17. Heritability of extinction rates links diversification patterns in molecular phylogenies and fossils. Rabosky DL Syst Biol; 2009 Dec; 58(6):629-40. PubMed ID: 20525614 [TBL] [Abstract][Full Text] [Related]
18. The reconstructed tree in the lineage-based model of protracted speciation. Lambert A; Morlon H; Etienne RS J Math Biol; 2015 Jan; 70(1-2):367-97. PubMed ID: 24615006 [TBL] [Abstract][Full Text] [Related]
19. Detecting shifts in diversity limits from molecular phylogenies: what can we know? McInnes L; Orme CD; Purvis A Proc Biol Sci; 2011 Nov; 278(1722):3294-302. PubMed ID: 21429924 [TBL] [Abstract][Full Text] [Related]
20. The ClaDS rate-heterogeneous birth-death prior for full phylogenetic inference in BEAST2. Barido-Sottani J; Morlon H Syst Biol; 2023 Nov; 72(5):1180-1187. PubMed ID: 37161619 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]