These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

165 related articles for article (PubMed ID: 37558282)

  • 21. Sparse and skew hashing of K-mers.
    Pibiri GE
    Bioinformatics; 2022 Jun; 38(Suppl 1):i185-i194. PubMed ID: 35758794
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Squeakr: an exact and approximate k-mer counting system.
    Pandey P; Bender MA; Johnson R; Patro R; Berger B
    Bioinformatics; 2018 Feb; 34(4):568-575. PubMed ID: 29444235
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Theory of local k-mer selection with applications to long-read alignment.
    Shaw J; Yu YW
    Bioinformatics; 2022 Oct; 38(20):4659-4669. PubMed ID: 36124869
    [TBL] [Abstract][Full Text] [Related]  

  • 24. These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure.
    Zhang Q; Pell J; Canino-Koning R; Howe AC; Brown CT
    PLoS One; 2014; 9(7):e101271. PubMed ID: 25062443
    [TBL] [Abstract][Full Text] [Related]  

  • 25. A general near-exact k-mer counting method with low memory consumption enables de novo assembly of 106× human sequence data in 2.7 hours.
    Shi CH; Yip KY
    Bioinformatics; 2020 Dec; 36(Suppl_2):i625-i633. PubMed ID: 33381843
    [TBL] [Abstract][Full Text] [Related]  

  • 26. A randomized optimal k-mer indexing approach for efficient parallel genome sequence compression.
    Roy S; Mukhopadhyay A
    Gene; 2024 May; 907():148235. PubMed ID: 38342250
    [TBL] [Abstract][Full Text] [Related]  

  • 27. SAKE: Strobemer-assisted k-mer extraction.
    Leinonen M; Salmela L
    PLoS One; 2023; 18(11):e0294415. PubMed ID: 38019768
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Asymptotically optimal minimizers schemes.
    Marçais G; DeBlasio D; Kingsford C
    Bioinformatics; 2018 Jul; 34(13):i13-i22. PubMed ID: 29949995
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Methods for Pangenomic Core Detection.
    Schulz T; Parmigiani L; Rempel A; Stoye J
    Methods Mol Biol; 2024; 2802():73-106. PubMed ID: 38819557
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Efficient mapping of accurate long reads in minimizer space with mapquik.
    Ekim B; Sahlin K; Medvedev P; Berger B; Chikhi R
    Genome Res; 2023 Jul; 33(7):1188-1197. PubMed ID: 37399256
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Effective sequence similarity detection with strobemers.
    Sahlin K
    Genome Res; 2021 Nov; 31(11):2080-2094. PubMed ID: 34667119
    [No Abstract]   [Full Text] [Related]  

  • 32. DSK: k-mer counting with very low memory usage.
    Rizk G; Lavenier D; Chikhi R
    Bioinformatics; 2013 Mar; 29(5):652-3. PubMed ID: 23325618
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Improving Bloom Filter Performance on Sequence Data Using k-mer Bloom Filters.
    Pellow D; Filippova D; Kingsford C
    J Comput Biol; 2017 Jun; 24(6):547-557. PubMed ID: 27828710
    [TBL] [Abstract][Full Text] [Related]  

  • 34. fimpera: drastic improvement of Approximate Membership Query data-structures with counts.
    Robidou L; Peterlongo P
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 37195454
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Parameterized syncmer schemes improve long-read mapping.
    Dutta A; Pellow D; Shamir R
    PLoS Comput Biol; 2022 Oct; 18(10):e1010638. PubMed ID: 36306319
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Transformation of FASTA files into feature vectors for unsupervised compression of short reads databases.
    Tang T; Li J
    J Bioinform Comput Biol; 2021 Feb; 19(1):2050048. PubMed ID: 33472569
    [TBL] [Abstract][Full Text] [Related]  

  • 37. ViralVectors: compact and scalable alignment-free virome feature generation.
    Ali S; Chourasia P; Tayebi Z; Bello B; Patterson M
    Med Biol Eng Comput; 2023 Oct; 61(10):2607-2626. PubMed ID: 37395885
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Turtle: identifying frequent k-mers with cache-efficient algorithms.
    Roy RS; Bhattacharya D; Schliep A
    Bioinformatics; 2014 Jul; 30(14):1950-7. PubMed ID: 24618471
    [TBL] [Abstract][Full Text] [Related]  

  • 39. KMC 2: fast and resource-frugal k-mer counting.
    Deorowicz S; Kokot M; Grabowski S; Debudaj-Grabysz A
    Bioinformatics; 2015 May; 31(10):1569-76. PubMed ID: 25609798
    [TBL] [Abstract][Full Text] [Related]  

  • 40. KmerStream: streaming algorithms for k-mer abundance estimation.
    Melsted P; Halldórsson BV
    Bioinformatics; 2014 Dec; 30(24):3541-7. PubMed ID: 25355787
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.