144 related articles for article (PubMed ID: 37572790)
21. Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events.
Menschaert G; Van Criekinge W; Notelaers T; Koch A; Crappé J; Gevaert K; Van Damme P
Mol Cell Proteomics; 2013 Jul; 12(7):1780-90. PubMed ID: 23429522
[TBL] [Abstract][Full Text] [Related]
22. GWIPS-viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms.
Michel AM; Ahern AM; Donohue CA; Baranov PV
Proteomics; 2015 Jul; 15(14):2410-6. PubMed ID: 25736862
[TBL] [Abstract][Full Text] [Related]
23. REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes.
Ndah E; Jonckheere V; Giess A; Valen E; Menschaert G; Van Damme P
Nucleic Acids Res; 2017 Nov; 45(20):e168. PubMed ID: 28977509
[TBL] [Abstract][Full Text] [Related]
24. Unraveling the small proteome of the plant symbiont
Hadjeras L; Heiniger B; Maaß S; Scheuer R; Gelhausen R; Azarderakhsh S; Barth-Weber S; Backofen R; Becher D; Ahrens CH; Sharma CM; Evguenieva-Hackenberg E
Microlife; 2023; 4():uqad012. PubMed ID: 37223733
[TBL] [Abstract][Full Text] [Related]
25. Comparison of software packages for detecting unannotated translated small open reading frames by Ribo-seq.
Tong G; Hah N; Martinez TF
bioRxiv; 2023 Dec; ():. PubMed ID: 38234848
[TBL] [Abstract][Full Text] [Related]
26. Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data.
Kiniry SJ; Judge CE; Michel AM; Baranov PV
Nucleic Acids Res; 2021 Jul; 49(W1):W662-W670. PubMed ID: 33950201
[TBL] [Abstract][Full Text] [Related]
27. Common and phylogenetically widespread coding for peptides by bacterial small RNAs.
Friedman RC; Kalkhof S; Doppelt-Azeroual O; Mueller SA; Chovancová M; von Bergen M; Schwikowski B
BMC Genomics; 2017 Jul; 18(1):553. PubMed ID: 28732463
[TBL] [Abstract][Full Text] [Related]
28. Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling.
Raj A; Wang SH; Shim H; Harpak A; Li YI; Engelmann B; Stephens M; Gilad Y; Pritchard JK
Elife; 2016 May; 5():. PubMed ID: 27232982
[TBL] [Abstract][Full Text] [Related]
29. Improved super-resolution ribosome profiling reveals prevalent translation of upstream ORFs and small ORFs in Arabidopsis.
Wu HL; Ai Q; Teixeira RT; Nguyen PHT; Song G; Montes C; Elmore JM; Walley JW; Hsu PY
Plant Cell; 2024 Feb; 36(3):510-539. PubMed ID: 38000896
[TBL] [Abstract][Full Text] [Related]
30. Real-Time Search-Assisted Multiplexed Quantitative Proteomics Reveals System-Wide Translational Regulation of Non-Canonical Short Open Reading Frames.
Kozuka-Hata H; Hiroki T; Miyamura N; Kitamura A; Tsumoto K; Inoue JI; Oyama M
Biomolecules; 2023 Jun; 13(6):. PubMed ID: 37371559
[TBL] [Abstract][Full Text] [Related]
31. Identification of novel translated small ORFs in
Stringer A; Smith C; Mangano K; Wade JT
J Bacteriol; 2021 Jan; 204(1):JB0035221. PubMed ID: 34662240
[TBL] [Abstract][Full Text] [Related]
32. Refinement of
Sánchez-Salvador A; González-de la Fuente S; Aguado B; Yates PA; Requena JM
Genes (Basel); 2023 Aug; 14(8):. PubMed ID: 37628688
[TBL] [Abstract][Full Text] [Related]
33. smORFer: a modular algorithm to detect small ORFs in prokaryotes.
Bartholomäus A; Kolte B; Mustafayeva A; Goebel I; Fuchs S; Benndorf D; Engelmann S; Ignatova Z
Nucleic Acids Res; 2021 Sep; 49(15):e89. PubMed ID: 34125903
[TBL] [Abstract][Full Text] [Related]
34. Ribosome Profiling of Plants.
Sonia J; Kanodia P; Lozier Z; Miller WA
Methods Mol Biol; 2024; 2724():139-163. PubMed ID: 37987904
[TBL] [Abstract][Full Text] [Related]
35. Observation of dually decoded regions of the human genome using ribosome profiling data.
Michel AM; Choudhury KR; Firth AE; Ingolia NT; Atkins JF; Baranov PV
Genome Res; 2012 Nov; 22(11):2219-29. PubMed ID: 22593554
[TBL] [Abstract][Full Text] [Related]
36. Developmental regulation of canonical and small ORF translation from mRNAs.
Patraquim P; Mumtaz MAS; Pueyo JI; Aspden JL; Couso JP
Genome Biol; 2020 May; 21(1):128. PubMed ID: 32471506
[TBL] [Abstract][Full Text] [Related]
37. De novo Identification of Actively Translated Open Reading Frames with Ribosome Profiling Data.
Zhu Y; Li F; Yang X; Xiao Z
J Vis Exp; 2022 Feb; (180):. PubMed ID: 35253791
[TBL] [Abstract][Full Text] [Related]
38. Improved Ribo-seq enables identification of cryptic translation events.
Erhard F; Halenius A; Zimmermann C; L'Hernault A; Kowalewski DJ; Weekes MP; Stevanovic S; Zimmer R; Dölken L
Nat Methods; 2018 May; 15(5):363-366. PubMed ID: 29529017
[TBL] [Abstract][Full Text] [Related]
39. HRPDviewer: human ribosome profiling data viewer.
Wu WS; Jiang YX; Chang JW; Chu YH; Chiu YH; Tsao YH; Nordling TEM; Tseng YY; Tseng JT
Database (Oxford); 2018 Jan; 2018():. PubMed ID: 30010738
[TBL] [Abstract][Full Text] [Related]
40. Identification of Translation Start Sites in Bacterial Genomes.
Meydan S; Klepacki D; Mankin AS; Vázquez-Laslop N
Methods Mol Biol; 2021; 2252():27-55. PubMed ID: 33765270
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]