These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

189 related articles for article (PubMed ID: 37582954)

  • 1. COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data.
    Sollier E; Kuipers J; Takahashi K; Beerenwinkel N; Jahn K
    Nat Commun; 2023 Aug; 14(1):4921. PubMed ID: 37582954
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Principles of Reconstructing the Subclonal Architecture of Cancers.
    Dentro SC; Wedge DC; Van Loo P
    Cold Spring Harb Perspect Med; 2017 Aug; 7(8):. PubMed ID: 28270531
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Methods for copy number aberration detection from single-cell DNA-sequencing data.
    Mallory XF; Edrisi M; Navin N; Nakhleh L
    Genome Biol; 2020 Aug; 21(1):208. PubMed ID: 32807205
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ConDoR: tumor phylogeny inference with a copy-number constrained mutation loss model.
    Sashittal P; Zhang H; Iacobuzio-Donahue CA; Raphael BJ
    Genome Biol; 2023 Nov; 24(1):272. PubMed ID: 38037115
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SCARLET: Single-cell tumor phylogeny inference with copy-number constrained mutation losses.
    Satas G; Zaccaria S; Mon G; Raphael BJ
    Cell Syst; 2020 Apr; 10(4):323-332.e8. PubMed ID: 32864481
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Inferring the Mutational History of a Tumor Using Multi-state Perfect Phylogeny Mixtures.
    El-Kebir M; Satas G; Oesper L; Raphael BJ
    Cell Syst; 2016 Jul; 3(1):43-53. PubMed ID: 27467246
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Computational validation of clonal and subclonal copy number alterations from bulk tumor sequencing using CNAqc.
    Antonello A; Bergamin R; Calonaci N; Househam J; Milite S; Williams MJ; Anselmi F; d'Onofrio A; Sundaram V; Sosinsky A; Cross WCH; Caravagna G
    Genome Biol; 2024 Jan; 25(1):38. PubMed ID: 38297376
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Phylogenetic Copy-Number Factorization of Multiple Tumor Samples.
    Zaccaria S; El-Kebir M; Klau GW; Raphael BJ
    J Comput Biol; 2018 Jul; 25(7):689-708. PubMed ID: 29658782
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations.
    Fu X; Lei H; Tao Y; Schwartz R
    Bioinformatics; 2022 Jun; 38(Suppl 1):i125-i133. PubMed ID: 35758777
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Integrating SNVs and CNAs on a phylogenetic tree from single-cell DNA sequencing data.
    Zhang L; Bass HW; Irianto J; Mallory X
    Genome Res; 2023 Dec; 33(11):2002-2017. PubMed ID: 37993137
    [TBL] [Abstract][Full Text] [Related]  

  • 11. BiTSC 2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data.
    Chen Z; Gong F; Wan L; Ma L
    Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35368055
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Inferring clonal evolution of tumors from single nucleotide somatic mutations.
    Jiao W; Vembu S; Deshwar AG; Stein L; Morris Q
    BMC Bioinformatics; 2014 Feb; 15():35. PubMed ID: 24484323
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Combined landscape of single-nucleotide variants and copy number alterations in clonal hematopoiesis.
    Saiki R; Momozawa Y; Nannya Y; Nakagawa MM; Ochi Y; Yoshizato T; Terao C; Kuroda Y; Shiraishi Y; Chiba K; Tanaka H; Niida A; Imoto S; Matsuda K; Morisaki T; Murakami Y; Kamatani Y; Matsuda S; Kubo M; Miyano S; Makishima H; Ogawa S
    Nat Med; 2021 Jul; 27(7):1239-1249. PubMed ID: 34239136
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Assessing intratumor heterogeneity and tracking longitudinal and spatial clonal evolutionary history by next-generation sequencing.
    Jiang Y; Qiu Y; Minn AJ; Zhang NR
    Proc Natl Acad Sci U S A; 2016 Sep; 113(37):E5528-37. PubMed ID: 27573852
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MixClone: a mixture model for inferring tumor subclonal populations.
    Li Y; Xie X
    BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S1. PubMed ID: 25707430
    [TBL] [Abstract][Full Text] [Related]  

  • 16. PhyloWGS: reconstructing subclonal composition and evolution from whole-genome sequencing of tumors.
    Deshwar AG; Vembu S; Yung CK; Jang GH; Stein L; Morris Q
    Genome Biol; 2015 Feb; 16(1):35. PubMed ID: 25786235
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors.
    Weber LL; Zhang C; Ochoa I; El-Kebir M
    PLoS Comput Biol; 2023 Oct; 19(10):e1011544. PubMed ID: 37819942
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CLImAT-HET: detecting subclonal copy number alterations and loss of heterozygosity in heterogeneous tumor samples from whole-genome sequencing data.
    Yu Z; Li A; Wang M
    BMC Med Genomics; 2017 Mar; 10(1):15. PubMed ID: 28298214
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CONIPHER: a computational framework for scalable phylogenetic reconstruction with error correction.
    Grigoriadis K; Huebner A; Bunkum A; Colliver E; Frankell AM; Hill MS; Thol K; Birkbak NJ; Swanton C; Zaccaria S; McGranahan N
    Nat Protoc; 2024 Jan; 19(1):159-183. PubMed ID: 38017136
    [TBL] [Abstract][Full Text] [Related]  

  • 20. CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data.
    Yu Z; Li A; Wang M
    BMC Bioinformatics; 2016 Aug; 17():310. PubMed ID: 27538789
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.