These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

205 related articles for article (PubMed ID: 37602215)

  • 1. Inferring CTCF-binding patterns and anchored loops across human tissues and cell types.
    Xu H; Yi X; Fan X; Wu C; Wang W; Chu X; Zhang S; Dong X; Wang Z; Wang J; Zhou Y; Zhao K; Yao H; Zheng N; Wang J; Chen Y; Plewczynski D; Sham PC; Chen K; Huang D; Li MJ
    Patterns (N Y); 2023 Aug; 4(8):100798. PubMed ID: 37602215
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Deep Learning of Sequence Patterns for CCCTC-Binding Factor-Mediated Chromatin Loop Formation.
    Kuang S; Wang L
    J Comput Biol; 2021 Feb; 28(2):133-145. PubMed ID: 33232622
    [No Abstract]   [Full Text] [Related]  

  • 3. CLNN-loop: a deep learning model to predict CTCF-mediated chromatin loops in the different cell lines and CTCF-binding sites (CBS) pair types.
    Zhang P; Wu Y; Zhou H; Zhou B; Zhang H; Wu H
    Bioinformatics; 2022 Sep; 38(19):4497-4504. PubMed ID: 35997565
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A sequence-based deep learning approach to predict CTCF-mediated chromatin loop.
    Lv H; Dao FY; Zulfiqar H; Su W; Ding H; Liu L; Lin H
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33634313
    [TBL] [Abstract][Full Text] [Related]  

  • 5. YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment.
    Beagan JA; Duong MT; Titus KR; Zhou L; Cao Z; Ma J; Lachanski CV; Gillis DR; Phillips-Cremins JE
    Genome Res; 2017 Jul; 27(7):1139-1152. PubMed ID: 28536180
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Jpx RNA regulates CTCF anchor site selection and formation of chromosome loops.
    Oh HJ; Aguilar R; Kesner B; Lee HG; Kriz AJ; Chu HP; Lee JT
    Cell; 2021 Dec; 184(25):6157-6173.e24. PubMed ID: 34856126
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Variable Extent of Lineage-Specificity and Developmental Stage-Specificity of Cohesin and CCCTC-Binding Factor Binding Within the Immunoglobulin and T Cell Receptor Loci.
    Loguercio S; Barajas-Mora EM; Shih HY; Krangel MS; Feeney AJ
    Front Immunol; 2018; 9():425. PubMed ID: 29593713
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CCIP: predicting CTCF-mediated chromatin loops with transitivity.
    Wang W; Gao L; Ye Y; Gao Y
    Bioinformatics; 2021 Dec; 37(24):4635-4642. PubMed ID: 34289010
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Predicting CTCF-mediated chromatin interactions by integrating genomic and epigenomic features.
    Kai Y; Andricovich J; Zeng Z; Zhu J; Tzatsos A; Peng W
    Nat Commun; 2018 Oct; 9(1):4221. PubMed ID: 30310060
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CTCF-mediated chromatin loops enclose inducible gene regulatory domains.
    Oti M; Falck J; Huynen MA; Zhou H
    BMC Genomics; 2016 Mar; 17():252. PubMed ID: 27004515
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Robust CTCF-Based Chromatin Architecture Underpins Epigenetic Changes in the Heart Failure Stress-Gene Response.
    Lee DP; Tan WLW; Anene-Nzelu CG; Lee CJM; Li PY; Luu TDA; Chan CX; Tiang Z; Ng SL; Huang X; Efthymios M; Autio MI; Jiang J; Fullwood MJ; Prabhakar S; Lieberman Aiden E; Foo RS
    Circulation; 2019 Apr; 139(16):1937-1956. PubMed ID: 30717603
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Prediction of CTCF loop anchor based on machine learning.
    Zhang X; Zhu W; Sun H; Ding Y; Liu L
    Front Genet; 2023; 14():1181956. PubMed ID: 37077544
    [No Abstract]   [Full Text] [Related]  

  • 13. ZNF143 is a regulator of chromatin loop.
    Wen Z; Huang ZT; Zhang R; Peng C
    Cell Biol Toxicol; 2018 Dec; 34(6):471-478. PubMed ID: 30120652
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Predicting CTCF-mediated chromatin loops using CTCF-MP.
    Zhang R; Wang Y; Yang Y; Zhang Y; Ma J
    Bioinformatics; 2018 Jul; 34(13):i133-i141. PubMed ID: 29949986
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CTCF Binding Polarity Determines Chromatin Looping.
    de Wit E; Vos ES; Holwerda SJ; Valdes-Quezada C; Verstegen MJ; Teunissen H; Splinter E; Wijchers PJ; Krijger PH; de Laat W
    Mol Cell; 2015 Nov; 60(4):676-84. PubMed ID: 26527277
    [TBL] [Abstract][Full Text] [Related]  

  • 16. [Combinatorial CRISPR inversions of CTCF sites in
    He XL; Li JH; Wu Q
    Yi Chuan; 2021 Aug; 43(8):758-774. PubMed ID: 34413016
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The structural basis for cohesin-CTCF-anchored loops.
    Li Y; Haarhuis JHI; Sedeño Cacciatore Á; Oldenkamp R; van Ruiten MS; Willems L; Teunissen H; Muir KW; de Wit E; Rowland BD; Panne D
    Nature; 2020 Feb; 578(7795):472-476. PubMed ID: 31905366
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DARDN: A Deep-Learning Approach for CTCF Binding Sequence Classification and Oncogenic Regulatory Feature Discovery.
    Cho HJ; Wang Z; Cong Y; Bekiranov S; Zhang A; Zang C
    Genes (Basel); 2024 Jan; 15(2):. PubMed ID: 38397134
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Chromatin Domain Organization of the TCRb Locus and Its Perturbation by Ectopic CTCF Binding.
    Rawat P; Jalan M; Sadhu A; Kanaujia A; Srivastava M
    Mol Cell Biol; 2017 May; 37(9):. PubMed ID: 28137913
    [TBL] [Abstract][Full Text] [Related]  

  • 20. 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs.
    Ibn-Salem J; Andrade-Navarro MA
    BMC Genomics; 2019 Oct; 20(1):777. PubMed ID: 31653198
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.