These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

107 related articles for article (PubMed ID: 37609268)

  • 21. Atomic resolution cryo electron microscopy of macromolecular complexes.
    Zhou ZH
    Adv Protein Chem Struct Biol; 2011; 82():1-35. PubMed ID: 21501817
    [TBL] [Abstract][Full Text] [Related]  

  • 22. RNA target highlights in CASP15: Evaluation of predicted models by structure providers.
    Kretsch RC; Andersen ES; Bujnicki JM; Chiu W; Das R; Luo B; Masquida B; McRae EKS; Schroeder GM; Su Z; Wedekind JE; Xu L; Zhang K; Zheludev IN; Moult J; Kryshtafovych A
    Proteins; 2023 Dec; 91(12):1600-1615. PubMed ID: 37466021
    [TBL] [Abstract][Full Text] [Related]  

  • 23. AlphaFold2 and CryoEM: Revisiting CryoEM modeling in near-atomic resolution density maps.
    Hryc CF; Baker ML
    iScience; 2022 Jul; 25(7):104496. PubMed ID: 35733789
    [TBL] [Abstract][Full Text] [Related]  

  • 24. EMBuilder: A Template Matching-based Automatic Model-building Program for High-resolution Cryo-Electron Microscopy Maps.
    Zhou N; Wang H; Wang J
    Sci Rep; 2017 Jun; 7(1):2664. PubMed ID: 28572576
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Building atomic models based on near atomic resolution cryoEM maps with existing tools.
    Yu I; Nguyen L; Avaylon J; Wang K; Lai M; Zhou ZH
    J Struct Biol; 2018 Nov; 204(2):313-318. PubMed ID: 30114513
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Assessment of comparative modeling in CASP2.
    Martin AC; MacArthur MW; Thornton JM
    Proteins; 1997; Suppl 1():14-28. PubMed ID: 9485491
    [TBL] [Abstract][Full Text] [Related]  

  • 27. A New Protocol for Atomic-Level Protein Structure Modeling and Refinement Using Low-to-Medium Resolution Cryo-EM Density Maps.
    Zhang B; Zhang X; Pearce R; Shen HB; Zhang Y
    J Mol Biol; 2020 Sep; 432(19):5365-5377. PubMed ID: 32771523
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Deep learning enables the atomic structure determination of the Fanconi Anemia core complex from cryoEM.
    Farrell DP; Anishchenko I; Shakeel S; Lauko A; Passmore LA; Baker D; DiMaio F
    IUCrJ; 2020 Sep; 7(Pt 5):881-892. PubMed ID: 32939280
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Improving protein structure prediction with extended sequence similarity searches and deep-learning-based refinement in CASP15.
    Oda T
    Proteins; 2023 Dec; 91(12):1712-1723. PubMed ID: 37485822
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Toward better refinement of comparative models: predicting loops in inexact environments.
    Sellers BD; Zhu K; Zhao S; Friesner RA; Jacobson MP
    Proteins; 2008 Aug; 72(3):959-71. PubMed ID: 18300241
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Improved cryoEM-Guided Iterative Molecular Dynamics--Rosetta Protein Structure Refinement Protocol for High Precision Protein Structure Prediction.
    Lindert S; McCammon JA
    J Chem Theory Comput; 2015 Mar; 11(3):1337-46. PubMed ID: 25883538
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Refinement of atomic models in high resolution EM reconstructions using Flex-EM and local assessment.
    Joseph AP; Malhotra S; Burnley T; Wood C; Clare DK; Winn M; Topf M
    Methods; 2016 May; 100():42-9. PubMed ID: 26988127
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Map Challenge assessment: Fair comparison of single particle cryoEM reconstructions.
    Heymann JB
    J Struct Biol; 2018 Nov; 204(2):360-367. PubMed ID: 30030042
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Scoring functions for cryoEM density fitting.
    Vasishtan D; Topf M
    J Struct Biol; 2011 May; 174(2):333-43. PubMed ID: 21296161
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Application of conformational space annealing to the protein structure modeling using cryo-EM maps.
    Park J; Joung I; Joo K; Lee J
    J Comput Chem; 2023 Nov; 44(30):2332-2346. PubMed ID: 37585026
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Modeling structurally variable regions in homologous proteins with rosetta.
    Rohl CA; Strauss CE; Chivian D; Baker D
    Proteins; 2004 May; 55(3):656-77. PubMed ID: 15103629
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Protein structure model refinement in CASP12 using short and long molecular dynamics simulations in implicit solvent.
    Terashi G; Kihara D
    Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):189-201. PubMed ID: 28833585
    [TBL] [Abstract][Full Text] [Related]  

  • 38. An evaluation of the use of databases in protein structure refinement.
    Zou JY; Mowbray SL
    Acta Crystallogr D Biol Crystallogr; 1994 May; 50(Pt 3):237-49. PubMed ID: 15299434
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Resolution and Probabilistic Models of Components in CryoEM Maps of Mature P22 Bacteriophage.
    Pintilie G; Chen DH; Haase-Pettingell CA; King JA; Chiu W
    Biophys J; 2016 Feb; 110(4):827-39. PubMed ID: 26743049
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Using NMR Chemical Shifts and Cryo-EM Density Restraints in Iterative Rosetta-MD Protein Structure Refinement.
    Leelananda SP; Lindert S
    J Chem Inf Model; 2020 May; 60(5):2522-2532. PubMed ID: 31872764
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.