BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

129 related articles for article (PubMed ID: 37646830)

  • 1. On the geometry of elementary flux modes.
    Wieder F; Henk M; Bockmayr A
    J Math Biol; 2023 Aug; 87(3):50. PubMed ID: 37646830
    [TBL] [Abstract][Full Text] [Related]  

  • 2. From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints.
    Klamt S; Regensburger G; Gerstl MP; Jungreuthmayer C; Schuster S; Mahadevan R; Zanghellini J; Müller S
    PLoS Comput Biol; 2017 Apr; 13(4):e1005409. PubMed ID: 28406903
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Finding MEMo: minimum sets of elementary flux modes.
    Röhl A; Bockmayr A
    J Math Biol; 2019 Oct; 79(5):1749-1777. PubMed ID: 31388689
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Which sets of elementary flux modes form thermodynamically feasible flux distributions?
    Gerstl MP; Jungreuthmayer C; Müller S; Zanghellini J
    FEBS J; 2016 May; 283(9):1782-94. PubMed ID: 26940826
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Estimating biological elementary flux modes that decompose a flux distribution by the minimal branching property.
    Chan SH; Solem C; Jensen PR; Ji P
    Bioinformatics; 2014 Nov; 30(22):3232-9. PubMed ID: 25100687
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A Markov constraint to uniquely identify elementary flux mode weights in unimolecular metabolic networks.
    Chitpin JG; Perkins TJ
    J Theor Biol; 2023 Nov; 575():111632. PubMed ID: 37804942
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Large-scale computation of elementary flux modes with bit pattern trees.
    Terzer M; Stelling J
    Bioinformatics; 2008 Oct; 24(19):2229-35. PubMed ID: 18676417
    [TBL] [Abstract][Full Text] [Related]  

  • 8. On dynamically generating relevant elementary flux modes in a metabolic network using optimization.
    Oddsdóttir HÆ; Hagrot E; Chotteau V; Forsgren A
    J Math Biol; 2015 Oct; 71(4):903-20. PubMed ID: 25323319
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Decomposing flux distributions into elementary flux modes in genome-scale metabolic networks.
    Chan SH; Ji P
    Bioinformatics; 2011 Aug; 27(16):2256-62. PubMed ID: 21685054
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Minimizing enzyme mass to decompose flux distribution for identifying biologically relevant elementary flux modes.
    Chen J; Huang Y; Zhong C
    Biosystems; 2023 Sep; 231():104981. PubMed ID: 37442363
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Recent advances in elementary flux modes and yield space analysis as useful tools in metabolic network studies.
    Horvat P; Koller M; Braunegg G
    World J Microbiol Biotechnol; 2015 Sep; 31(9):1315-28. PubMed ID: 26066363
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Metabolomics integrated elementary flux mode analysis in large metabolic networks.
    Gerstl MP; Ruckerbauer DE; Mattanovich D; Jungreuthmayer C; Zanghellini J
    Sci Rep; 2015 Mar; 5():8930. PubMed ID: 25754258
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Flux tope analysis: studying the coordination of reaction directions in metabolic networks.
    Gerstl MP; Müller S; Regensburger G; Zanghellini J
    Bioinformatics; 2019 Jan; 35(2):266-273. PubMed ID: 30649351
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Computing the shortest elementary flux modes in genome-scale metabolic networks.
    de Figueiredo LF; Podhorski A; Rubio A; Kaleta C; Beasley JE; Schuster S; Planes FJ
    Bioinformatics; 2009 Dec; 25(23):3158-65. PubMed ID: 19793869
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks.
    Pey J; Planes FJ
    Bioinformatics; 2014 Aug; 30(15):2197-203. PubMed ID: 24728852
    [TBL] [Abstract][Full Text] [Related]  

  • 16. EFMviz: A COBRA Toolbox extension to visualize Elementary Flux Modes in Genome-Scale Metabolic Models.
    Sarathy C; Kutmon M; Lenz M; Adriaens ME; Evelo CT; Arts ICW
    Metabolites; 2020 Feb; 10(2):. PubMed ID: 32059585
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Thermodynamic constraints for identifying elementary flux modes.
    Peres S; Schuster S; Dague P
    Biochem Soc Trans; 2018 Jun; 46(3):641-647. PubMed ID: 29743275
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Detecting structural invariants in biological reaction networks.
    Behre J; de Figueiredo LF; Schuster S; Kaleta C
    Methods Mol Biol; 2012; 804():377-407. PubMed ID: 22144164
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Flux Coupling and the Objective Functions' Length in EFMs.
    Guil F; Hidalgo JF; García JM
    Metabolites; 2020 Nov; 10(12):. PubMed ID: 33260526
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Robustness analysis of elementary flux modes generated by column generation.
    Oddsdóttir HÆ; Hagrot E; Chotteau V; Forsgren A
    Math Biosci; 2016 Mar; 273():45-56. PubMed ID: 26748294
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.