129 related articles for article (PubMed ID: 37646830)
21. On the representativeness and stability of a set of EFMs.
Guil F; Hidalgo JF; García JM
Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37252834
[TBL] [Abstract][Full Text] [Related]
22. Elementary flux modes in a nutshell: properties, calculation and applications.
Zanghellini J; Ruckerbauer DE; Hanscho M; Jungreuthmayer C
Biotechnol J; 2013 Sep; 8(9):1009-16. PubMed ID: 23788432
[TBL] [Abstract][Full Text] [Related]
23. A graph-based approach to analyze flux-balanced pathways in metabolic networks.
Arabzadeh M; Saheb Zamani M; Sedighi M; Marashi SA
Biosystems; 2018 Mar; 165():40-51. PubMed ID: 29337084
[TBL] [Abstract][Full Text] [Related]
24. Dynamic metabolic models of CHO cell cultures through minimal sets of elementary flux modes.
Zamorano F; Vande Wouwer A; Jungers RM; Bastin G
J Biotechnol; 2013 Apr; 164(3):409-22. PubMed ID: 22698821
[TBL] [Abstract][Full Text] [Related]
25. Do elementary flux modes combine linearly at the "atomic" level?: integrating tracer-based metabolomics data and elementary flux modes.
Pey J; Theodoropoulos C; Rezola A; Rubio A; Cascante M; Planes FJ
Biosystems; 2011 Aug; 105(2):140-6. PubMed ID: 21536097
[TBL] [Abstract][Full Text] [Related]
26. Towards scaling elementary flux mode computation.
Ullah E; Yosafshahi M; Hassoun S
Brief Bioinform; 2020 Dec; 21(6):1875-1885. PubMed ID: 31745550
[TBL] [Abstract][Full Text] [Related]
27. A depth-first search algorithm to compute elementary flux modes by linear programming.
Quek LE; Nielsen LK
BMC Syst Biol; 2014 Jul; 8():94. PubMed ID: 25074068
[TBL] [Abstract][Full Text] [Related]
28. Selection of human tissue-specific elementary flux modes using gene expression data.
Rezola A; Pey J; de Figueiredo LF; Podhorski A; Schuster S; Rubio A; Planes FJ
Bioinformatics; 2013 Aug; 29(16):2009-16. PubMed ID: 23742984
[TBL] [Abstract][Full Text] [Related]
29. Complete enumeration of elementary flux modes through scalable demand-based subnetwork definition.
Hunt KA; Folsom JP; Taffs RL; Carlson RP
Bioinformatics; 2014 Jun; 30(11):1569-78. PubMed ID: 24497502
[TBL] [Abstract][Full Text] [Related]
30. gEFM: An Algorithm for Computing Elementary Flux Modes Using Graph Traversal.
Ullah E; Aeron S; Hassoun S
IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(1):122-34. PubMed ID: 26886737
[TBL] [Abstract][Full Text] [Related]
31. Analysis of metabolic subnetworks by flux cone projection.
Marashi SA; David L; Bockmayr A
Algorithms Mol Biol; 2012 May; 7(1):17. PubMed ID: 22642830
[TBL] [Abstract][Full Text] [Related]
32. Predicting genetic engineering targets with Elementary Flux Mode Analysis: a review of four current methods.
Ruckerbauer DE; Jungreuthmayer C; Zanghellini J
N Biotechnol; 2015 Dec; 32(6):534-46. PubMed ID: 25917465
[TBL] [Abstract][Full Text] [Related]
33. Elementary flux modes analysis of functional domain networks allows a better metabolic pathway interpretation.
Pérès S; Felicori L; Molina F
PLoS One; 2013; 8(10):e76143. PubMed ID: 24204596
[TBL] [Abstract][Full Text] [Related]
34. tEFMA: computing thermodynamically feasible elementary flux modes in metabolic networks.
Gerstl MP; Jungreuthmayer C; Zanghellini J
Bioinformatics; 2015 Jul; 31(13):2232-4. PubMed ID: 25701571
[TBL] [Abstract][Full Text] [Related]
35. Improving the EFMs quality by augmenting their representativeness in LP methods.
Hidalgo JF; Egea JA; Guil F; García JM
BMC Syst Biol; 2018 Nov; 12(Suppl 5):101. PubMed ID: 30458791
[TBL] [Abstract][Full Text] [Related]
36. Boosting the extraction of elementary flux modes in genome-scale metabolic networks using the linear programming approach.
Guil F; Hidalgo JF; García JM
Bioinformatics; 2020 Aug; 36(14):4163-4170. PubMed ID: 32348455
[TBL] [Abstract][Full Text] [Related]
37. Elementary vectors and autocatalytic sets for resource allocation in next-generation models of cellular growth.
Müller S; Széliová D; Zanghellini J
PLoS Comput Biol; 2022 Feb; 18(2):e1009843. PubMed ID: 35104290
[TBL] [Abstract][Full Text] [Related]
38. Comparison between elementary flux modes analysis and 13C-metabolic fluxes measured in bacterial and plant cells.
Beurton-Aimar M; Beauvoit B; Monier A; Vallée F; Dieuaide-Noubhani M; Colombié S
BMC Syst Biol; 2011 Jun; 5():95. PubMed ID: 21682932
[TBL] [Abstract][Full Text] [Related]
39. SSDesign: Computational metabolic pathway design based on flux variability using elementary flux modes.
Toya Y; Shiraki T; Shimizu H
Biotechnol Bioeng; 2015 Apr; 112(4):759-68. PubMed ID: 25408191
[TBL] [Abstract][Full Text] [Related]
40. How important is thermodynamics for identifying elementary flux modes?
Peres S; Jolicœur M; Moulin C; Dague P; Schuster S
PLoS One; 2017; 12(2):e0171440. PubMed ID: 28222104
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
