These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

226 related articles for article (PubMed ID: 37650367)

  • 21. ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs.
    Kong L; Ju F; Zheng WM; Zhu J; Sun S; Xu J; Bu D
    J Comput Biol; 2022 Feb; 29(2):92-105. PubMed ID: 35073170
    [TBL] [Abstract][Full Text] [Related]  

  • 22. LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation.
    Zheng W; Wuyun Q; Zhou X; Li Y; Freddolino PL; Zhang Y
    Nucleic Acids Res; 2022 Jul; 50(W1):W454-W464. PubMed ID: 35420129
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Protein inter-residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14.
    Li Y; Zhang C; Zheng W; Zhou X; Bell EW; Yu DJ; Zhang Y
    Proteins; 2021 Dec; 89(12):1911-1921. PubMed ID: 34382712
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Fast and accurate Ab Initio Protein structure prediction using deep learning potentials.
    Pearce R; Li Y; Omenn GS; Zhang Y
    PLoS Comput Biol; 2022 Sep; 18(9):e1010539. PubMed ID: 36112717
    [TBL] [Abstract][Full Text] [Related]  

  • 25. The Impact of AI-Based Modeling on the Accuracy of Protein Assembly Prediction: Insights from CASP15.
    Ozden B; Kryshtafovych A; Karaca E
    bioRxiv; 2023 Sep; ():. PubMed ID: 37503072
    [TBL] [Abstract][Full Text] [Related]  

  • 26. I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction.
    Zhou X; Zheng W; Li Y; Pearce R; Zhang C; Bell EW; Zhang G; Zhang Y
    Nat Protoc; 2022 Oct; 17(10):2326-2353. PubMed ID: 35931779
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Petabase-Scale Homology Search for Structure Prediction.
    Lee S; Kim G; Karin EL; Mirdita M; Park S; Chikhi R; Babaian A; Kryshtafovych A; Steinegger M
    Cold Spring Harb Perspect Biol; 2024 May; 16(5):. PubMed ID: 38316555
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Improving AlphaFold2-based protein tertiary structure prediction with MULTICOM in CASP15.
    Liu J; Guo Z; Wu T; Roy RS; Chen C; Cheng J
    Commun Chem; 2023 Sep; 6(1):188. PubMed ID: 37679431
    [TBL] [Abstract][Full Text] [Related]  

  • 29. MULTICOM2 open-source protein structure prediction system powered by deep learning and distance prediction.
    Wu T; Liu J; Guo Z; Hou J; Cheng J
    Sci Rep; 2021 Jun; 11(1):13155. PubMed ID: 34162922
    [TBL] [Abstract][Full Text] [Related]  

  • 30. TASSER_low-zsc: an approach to improve structure prediction using low z-score-ranked templates.
    Pandit SB; Skolnick J
    Proteins; 2010 Oct; 78(13):2769-80. PubMed ID: 20635423
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Improving protein structure prediction with extended sequence similarity searches and deep-learning-based refinement in CASP15.
    Oda T
    Proteins; 2023 Dec; 91(12):1712-1723. PubMed ID: 37485822
    [TBL] [Abstract][Full Text] [Related]  

  • 32. I-TASSER server for protein 3D structure prediction.
    Zhang Y
    BMC Bioinformatics; 2008 Jan; 9():40. PubMed ID: 18215316
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Protein Structure and Function Prediction Using I-TASSER.
    Yang J; Zhang Y
    Curr Protoc Bioinformatics; 2015 Dec; 52():5.8.1-5.8.15. PubMed ID: 26678386
    [TBL] [Abstract][Full Text] [Related]  

  • 34. I-TASSER: fully automated protein structure prediction in CASP8.
    Zhang Y
    Proteins; 2009; 77 Suppl 9(Suppl 9):100-13. PubMed ID: 19768687
    [TBL] [Abstract][Full Text] [Related]  

  • 35. DeepECA: an end-to-end learning framework for protein contact prediction from a multiple sequence alignment.
    Fukuda H; Tomii K
    BMC Bioinformatics; 2020 Jan; 21(1):10. PubMed ID: 31918654
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Template-based prediction of protein structure with deep learning.
    Zhang H; Shen Y
    BMC Genomics; 2020 Dec; 21(Suppl 11):878. PubMed ID: 33372607
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Automated structure prediction of weakly homologous proteins on a genomic scale.
    Zhang Y; Skolnick J
    Proc Natl Acad Sci U S A; 2004 May; 101(20):7594-9. PubMed ID: 15126668
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.
    Lensink MF; Brysbaert G; Raouraoua N; Bates PA; Giulini M; Honorato RV; van Noort C; Teixeira JMC; Bonvin AMJJ; Kong R; Shi H; Lu X; Chang S; Liu J; Guo Z; Chen X; Morehead A; Roy RS; Wu T; Giri N; Quadir F; Chen C; Cheng J; Del Carpio CA; Ichiishi E; Rodriguez-Lumbreras LA; Fernandez-Recio J; Harmalkar A; Chu LS; Canner S; Smanta R; Gray JJ; Li H; Lin P; He J; Tao H; Huang SY; Roel-Touris J; Jimenez-Garcia B; Christoffer CW; Jain AJ; Kagaya Y; Kannan H; Nakamura T; Terashi G; Verburgt JC; Zhang Y; Zhang Z; Fujuta H; Sekijima M; Kihara D; Khan O; Kotelnikov S; Ghani U; Padhorny D; Beglov D; Vajda S; Kozakov D; Negi SS; Ricciardelli T; Barradas-Bautista D; Cao Z; Chawla M; Cavallo L; Oliva R; Yin R; Cheung M; Guest JD; Lee J; Pierce BG; Shor B; Cohen T; Halfon M; Schneidman-Duhovny D; Zhu S; Yin R; Sun Y; Shen Y; Maszota-Zieleniak M; Bojarski KK; Lubecka EA; Marcisz M; Danielsson A; Dziadek L; Gaardlos M; Gieldon A; Liwo A; Samsonov SA; Slusarz R; Zieba K; Sieradzan AK; Czaplewski C; Kobayashi S; Miyakawa Y; Kiyota Y; Takeda-Shitaka M; Olechnovic K; Valancauskas L; Dapkunas J; Venclovas C; Wallner B; Yang L; Hou C; He X; Guo S; Jiang S; Ma X; Duan R; Qui L; Xu X; Zou X; Velankar S; Wodak SJ
    Proteins; 2023 Dec; 91(12):1658-1683. PubMed ID: 37905971
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Development and benchmarking of TASSER(iter) for the iterative improvement of protein structure predictions.
    Lee SY; Skolnick J
    Proteins; 2007 Jul; 68(1):39-47. PubMed ID: 17469193
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Combining pairwise structural similarity and deep learning interface contact prediction to estimate protein complex model accuracy in CASP15.
    Roy RS; Liu J; Giri N; Guo Z; Cheng J
    Proteins; 2023 Dec; 91(12):1889-1902. PubMed ID: 37357816
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 12.