These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

126 related articles for article (PubMed ID: 37651445)

  • 21. AliSim: A Fast and Versatile Phylogenetic Sequence Simulator for the Genomic Era.
    Ly-Trong N; Naser-Khdour S; Lanfear R; Minh BQ
    Mol Biol Evol; 2022 May; 39(5):. PubMed ID: 35511713
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Tracking and curating putative SARS-CoV-2 recombinants with RIVET.
    Smith K; Ye C; Turakhia Y
    Bioinformatics; 2023 Sep; 39(9):. PubMed ID: 37651464
    [TBL] [Abstract][Full Text] [Related]  

  • 23. IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era.
    Minh BQ; Schmidt HA; Chernomor O; Schrempf D; Woodhams MD; von Haeseler A; Lanfear R
    Mol Biol Evol; 2020 May; 37(5):1530-1534. PubMed ID: 32011700
    [TBL] [Abstract][Full Text] [Related]  

  • 24. pipesnake: generalized software for the assembly and analysis of phylogenomic datasets from conserved genomic loci.
    Brennan IG; Singhal S; Al Bkhetan Z
    Bioinformatics; 2024 May; 40(5):. PubMed ID: 38597877
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Scalable neighbour search and alignment with uvaia.
    de Oliveira Martins L; Mather AE; Page AJ
    PeerJ; 2024; 12():e16890. PubMed ID: 38464752
    [TBL] [Abstract][Full Text] [Related]  

  • 26. TNet: Transmission Network Inference Using Within-Host Strain Diversity and its Application to Geographical Tracking of COVID-19 Spread.
    Dhar S; Zhang C; Mandoiu II; Bansal MS
    IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(1):230-242. PubMed ID: 34255632
    [TBL] [Abstract][Full Text] [Related]  

  • 27. ONTdeCIPHER: an amplicon-based nanopore sequencing pipeline for tracking pathogen variants.
    Cherif E; Thiam FS; Salma M; Rivera-Ingraham G; Justy F; Deremarque T; Breugnot D; Doudou JC; Gozlan RE; Combe M
    Bioinformatics; 2022 Mar; 38(7):2033-2035. PubMed ID: 35080622
    [TBL] [Abstract][Full Text] [Related]  

  • 28. cognac: rapid generation of concatenated gene alignments for phylogenetic inference from large, bacterial whole genome sequencing datasets.
    Crawford RD; Snitkin ES
    BMC Bioinformatics; 2021 Feb; 22(1):70. PubMed ID: 33588753
    [TBL] [Abstract][Full Text] [Related]  

  • 29. TeachEnG: a Teaching Engine for Genomics.
    Kim M; Kim Y; Qian L; Song JS
    Bioinformatics; 2017 Oct; 33(20):3296-3298. PubMed ID: 29028264
    [TBL] [Abstract][Full Text] [Related]  

  • 30. phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets.
    De Maio N; Boulton W; Weilguny L; Walker CR; Turakhia Y; Corbett-Detig R; Goldman N
    PLoS Comput Biol; 2022 Apr; 18(4):e1010056. PubMed ID: 35486906
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Two C++ libraries for counting trees on a phylogenetic terrace.
    Biczok R; Bozsoky P; Eisenmann P; Ernst J; Ribizel T; Scholz F; Trefzer A; Weber F; Hamann M; Stamatakis A
    Bioinformatics; 2018 Oct; 34(19):3399-3401. PubMed ID: 29746618
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Recrafting the neighbor-joining method.
    Mailund T; Brodal GS; Fagerberg R; Pedersen CN; Phillips D
    BMC Bioinformatics; 2006 Jan; 7():29. PubMed ID: 16423304
    [TBL] [Abstract][Full Text] [Related]  

  • 33. A LASSO-based approach to sample sites for phylogenetic tree search.
    Ecker N; Azouri D; Bettisworth B; Stamatakis A; Mansour Y; Mayrose I; Pupko T
    Bioinformatics; 2022 Jun; 38(Suppl 1):i118-i124. PubMed ID: 35758778
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Phyx: phylogenetic tools for unix.
    Brown JW; Walker JF; Smith SA
    Bioinformatics; 2017 Jun; 33(12):1886-1888. PubMed ID: 28174903
    [TBL] [Abstract][Full Text] [Related]  

  • 35. PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees.
    Fang Y; Liu C; Lin J; Li X; Alavian KN; Yang Y; Niu Y
    BMC Evol Biol; 2019 Dec; 19(1):219. PubMed ID: 31791235
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Phylogenetic analysis using complete signature information of whole genomes and clustered Neighbour-Joining method.
    Wu X; Wan XF; Wu G; Xu D; Lin G
    Int J Bioinform Res Appl; 2006; 2(3):219-48. PubMed ID: 18048163
    [TBL] [Abstract][Full Text] [Related]  

  • 37. CloudPhylo: a fast and scalable tool for phylogeny reconstruction.
    Xu X; Ji Z; Zhang Z
    Bioinformatics; 2017 Feb; 33(3):438-440. PubMed ID: 28172557
    [TBL] [Abstract][Full Text] [Related]  

  • 38. CoVizu: Rapid analysis and visualization of the global diversity of SARS-CoV-2 genomes.
    Ferreira RC; Wong E; Gugan G; Wade K; Liu M; Baena LM; Chato C; Lu B; Olabode AS; Poon AFY
    Virus Evol; 2021 Dec; 7(2):veab092. PubMed ID: 37124703
    [TBL] [Abstract][Full Text] [Related]  

  • 39. A public website for the automated assessment and validation of SARS-CoV-2 diagnostic PCR assays.
    Li PE; Myers Y Gutiérrez A; Davenport K; Flynn M; Hu B; Lo CC; Player Jackson E; Shakya M; Xu Y; Gans JD; Chain PSG
    Bioinformatics; 2021 May; 37(7):1024-1025. PubMed ID: 32777813
    [TBL] [Abstract][Full Text] [Related]  

  • 40. WMSA 2: a multiple DNA/RNA sequence alignment tool implemented with accurate progressive mode and a fast win-win mode combining the center star and progressive strategies.
    Chen J; Chao J; Liu H; Yang F; Zou Q; Tang F
    Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37200156
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.