199 related articles for article (PubMed ID: 37673071)
1. Recapitulation of patient-specific 3D chromatin conformation using machine learning.
Xu D; Forbes AN; Cohen S; Palladino A; Karadimitriou T; Khurana E
Cell Rep Methods; 2023 Sep; 3(9):100578. PubMed ID: 37673071
[TBL] [Abstract][Full Text] [Related]
2. Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads.
De Rop FV; Ismail JN; Bravo González-Blas C; Hulselmans GJ; Flerin CC; Janssens J; Theunis K; Christiaens VM; Wouters J; Marcassa G; de Wit J; Poovathingal S; Aerts S
Elife; 2022 Feb; 11():. PubMed ID: 35195064
[TBL] [Abstract][Full Text] [Related]
3. Specific chromatin landscapes and transcription factors couple breast cancer subtype with metastatic relapse to lung or brain.
Cai WL; Greer CB; Chen JF; Arnal-Estapé A; Cao J; Yan Q; Nguyen DX
BMC Med Genomics; 2020 Mar; 13(1):33. PubMed ID: 32143622
[TBL] [Abstract][Full Text] [Related]
4. DeepChIA-PET: Accurately predicting ChIA-PET from Hi-C and ChIP-seq with deep dilated networks.
Liu T; Wang Z
PLoS Comput Biol; 2023 Jul; 19(7):e1011307. PubMed ID: 37440599
[TBL] [Abstract][Full Text] [Related]
5. ATAC-Seq Analysis of Accessible Chromatin: From Experimental Steps to Data Analysis.
Tatara M; Ikeda T; Namekawa SH; Maezawa S
Methods Mol Biol; 2023; 2577():65-81. PubMed ID: 36173566
[TBL] [Abstract][Full Text] [Related]
6. Mapping Chromatin Accessibility in Human Naïve Pluripotent Stem Cells Using ATAC-Seq.
Cinkornpumin JK; Hossain I; Pastor WA
Methods Mol Biol; 2022; 2416():201-211. PubMed ID: 34870838
[TBL] [Abstract][Full Text] [Related]
7. Genome-Wide Mapping of Active Regulatory Elements Using ATAC-seq.
Marinov GK; Shipony Z; Kundaje A; Greenleaf WJ
Methods Mol Biol; 2023; 2611():3-19. PubMed ID: 36807060
[TBL] [Abstract][Full Text] [Related]
8. Genome-Wide Analysis of Yeast Metabolic Cycle through Metabolic Network Models Reveals Superiority of Integrated ATAC-seq Data over RNA-seq Data.
Cesur MF; Çakır T; Pir P
mSystems; 2022 Jun; 7(3):e0134721. PubMed ID: 35695574
[TBL] [Abstract][Full Text] [Related]
9. A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data.
Huang L; Yang Y; Li G; Jiang M; Wen J; Abnousi A; Rosen JD; Hu M; Li Y
Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35488276
[TBL] [Abstract][Full Text] [Related]
10. A neural network based model effectively predicts enhancers from clinical ATAC-seq samples.
Thibodeau A; Uyar A; Khetan S; Stitzel ML; Ucar D
Sci Rep; 2018 Oct; 8(1):16048. PubMed ID: 30375457
[TBL] [Abstract][Full Text] [Related]
11. Integrating ATAC-seq and RNA-seq Reveals the Dynamics of Chromatin Accessibility and Gene Expression in Apple Response to Drought.
Wang S; He J; Deng M; Wang C; Wang R; Yan J; Luo M; Ma F; Guan Q; Xu J
Int J Mol Sci; 2022 Sep; 23(19):. PubMed ID: 36232500
[TBL] [Abstract][Full Text] [Related]
12. Assessing Chromatin Accessibility During WBR in Acoels.
Gehrke AR; Srivastava M
Methods Mol Biol; 2022; 2450():549-561. PubMed ID: 35359328
[TBL] [Abstract][Full Text] [Related]
13. High-Resolution ATAC-Seq Analysis of Frozen Clinical Tissues.
Cejas P; Long HW
Methods Mol Biol; 2022; 2458():259-267. PubMed ID: 35103972
[TBL] [Abstract][Full Text] [Related]
14. Enhancer occlusion transcripts regulate the activity of human enhancer domains via transcriptional interference: a computational perspective.
Pande A; Makalowski W; Brosius J; Raabe CA
Nucleic Acids Res; 2020 Apr; 48(7):3435-3454. PubMed ID: 32133533
[TBL] [Abstract][Full Text] [Related]
15. Optimization of ATAC-seq in wheat seedling roots using INTACT-isolated nuclei.
Debernardi JM; Burguener G; Bubb K; Liu Q; Queitsch C; Dubcovsky J
BMC Plant Biol; 2023 May; 23(1):270. PubMed ID: 37211599
[TBL] [Abstract][Full Text] [Related]
16. Multi-Omics Analysis for Transcriptional Regulation of Immune-Related Targets Using Epigenetic Data: A New Research Direction.
Huang C; Zhang N; Xiong H; Wang N; Chen Z; Ni Z; Liu X; Lin B; Ge B; Du B; Huang Q
Front Immunol; 2021; 12():741634. PubMed ID: 35046932
[TBL] [Abstract][Full Text] [Related]
17. Exploring Chromatin Accessibility in Mouse Epiblast Stem Cells with ATAC-Seq.
Salehin N; Santucci N; Osteil P; Tam PPL
Methods Mol Biol; 2022; 2490():93-100. PubMed ID: 35486242
[TBL] [Abstract][Full Text] [Related]
18. ATAC-seq Optimization for Cancer Epigenetics Research.
Cooper M; Ray A; Bhattacharya A; Dhasarathy A; Takaku M
J Vis Exp; 2022 Jun; (184):. PubMed ID: 35848835
[TBL] [Abstract][Full Text] [Related]
19. [Advances in assay for transposase-accessible chromatin with high-throughput sequencing].
Wu J; Quan JP; Ye Y; Wu ZF; Yang J; Yang M; Zheng EQ
Yi Chuan; 2020 Apr; 42(4):333-346. PubMed ID: 32312702
[TBL] [Abstract][Full Text] [Related]
20. Integrated analysis of ATAC-seq and RNA-seq reveals the transcriptional regulation network in SLE.
Wu J; Li Y; Feng D; Yu Y; Long H; Hu Z; Lu Q; Zhao M
Int Immunopharmacol; 2023 Mar; 116():109803. PubMed ID: 36738683
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
