BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

143 related articles for article (PubMed ID: 37682115)

  • 1. ePlatypus: an ecosystem for computational analysis of immunogenomics data.
    Cotet TS; Agrafiotis A; Kreiner V; Kuhn R; Shlesinger D; Manero-Carranza M; Khodaverdi K; Kladis E; Desideri Perea A; Maassen-Veeters D; Glänzer W; Massery S; Guerci L; Hong KL; Han J; Stiklioraitis K; D'Arcy VM; Dizerens R; Kilchenmann S; Stalder L; Nissen L; Vogelsanger B; Anzböck S; Laslo D; Bakker S; Kondorosy M; Venerito M; Sanz García A; Feller I; Oxenius A; Reddy ST; Yermanos A
    Bioinformatics; 2023 Sep; 39(9):. PubMed ID: 37682115
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Echidna: integrated simulations of single-cell immune receptor repertoires and transcriptomes.
    Han J; Masserey S; Shlesinger D; Kuhn R; Papadopoulou C; Agrafiotis A; Kreiner V; Dizerens R; Hong KL; Weber C; Greiff V; Oxenius A; Reddy ST; Yermanos A
    Bioinform Adv; 2022; 2(1):vbac062. PubMed ID: 36699357
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Computational Strategies for Dissecting the High-Dimensional Complexity of Adaptive Immune Repertoires.
    Miho E; Yermanos A; Weber CR; Berger CT; Reddy ST; Greiff V
    Front Immunol; 2018; 9():224. PubMed ID: 29515569
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Platypus: an open-access software for integrating lymphocyte single-cell immune repertoires with transcriptomes.
    Yermanos A; Agrafiotis A; Kuhn R; Robbiani D; Yates J; Papadopoulou C; Han J; Sandu I; Weber C; Bieberich F; Vazquez-Lombardi R; Dounas A; Neumeier D; Oxenius A; Reddy ST
    NAR Genom Bioinform; 2021 Jun; 3(2):lqab023. PubMed ID: 33884369
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching.
    Rognes T; Scheffer L; Greiff V; Sandve GK
    Bioinformatics; 2022 Sep; 38(17):4230-4232. PubMed ID: 35852318
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data.
    Sturm G; Szabo T; Fotakis G; Haider M; Rieder D; Trajanoski Z; Finotello F
    Bioinformatics; 2020 Sep; 36(18):4817-4818. PubMed ID: 32614448
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Accelerating bioinformatics implementation in public health.
    Libuit KG; Doughty EL; Otieno JR; Ambrosio F; Kapsak CJ; Smith EA; Wright SM; Scribner MR; Petit Iii RA; Mendes CI; Huergo M; Legacki G; Loreth C; Park DJ; Sevinsky JR
    Microb Genom; 2023 Jul; 9(7):. PubMed ID: 37428142
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PLATYPUS: A Multiple-View Learning Predictive Framework for Cancer Drug Sensitivity Prediction.
    Graim K; Friedl V; Houlahan KE; Stuart JM
    Pac Symp Biocomput; 2019; 24():136-147. PubMed ID: 30864317
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CytoPy: An autonomous cytometry analysis framework.
    Burton RJ; Ahmed R; Cuff SM; Baker S; Artemiou A; Eberl M
    PLoS Comput Biol; 2021 Jun; 17(6):e1009071. PubMed ID: 34101722
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ATHENA: analysis of tumor heterogeneity from spatial omics measurements.
    Martinelli AL; Rapsomaniki MA
    Bioinformatics; 2022 May; 38(11):3151-3153. PubMed ID: 35485743
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Transcriptome and computational approaches highlighting the molecular regulation of Zacco platypus induced by mesocosm exposure to common disinfectant chlorine.
    Suman TY; Kim SY; Yeom DH; Jang Y; Jeong TY; Jeon J
    Chemosphere; 2023 Apr; 319():137989. PubMed ID: 36736481
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Phylesystem: a git-based data store for community-curated phylogenetic estimates.
    McTavish EJ; Hinchliff CE; Allman JF; Brown JW; Cranston KA; Holder MT; Rees JA; Smith SA
    Bioinformatics; 2015 Sep; 31(17):2794-800. PubMed ID: 25940563
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Scalable transcriptomics analysis with Dask: applications in data science and machine learning.
    Moreno M; Vilaça R; Ferreira PG
    BMC Bioinformatics; 2022 Nov; 23(1):514. PubMed ID: 36451115
    [TBL] [Abstract][Full Text] [Related]  

  • 14. BioContainers: an open-source and community-driven framework for software standardization.
    da Veiga Leprevost F; Grüning BA; Alves Aflitos S; Röst HL; Uszkoreit J; Barsnes H; Vaudel M; Moreno P; Gatto L; Weber J; Bai M; Jimenez RC; Sachsenberg T; Pfeuffer J; Vera Alvarez R; Griss J; Nesvizhskii AI; Perez-Riverol Y
    Bioinformatics; 2017 Aug; 33(16):2580-2582. PubMed ID: 28379341
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SpatialCells: automated profiling of tumor microenvironments with spatially resolved multiplexed single-cell data.
    Wan G; Maliga Z; Yan B; Vallius T; Shi Y; Khattab S; Chang C; Nirmal AJ; Yu KH; Liu D; Lian CG; DeSimone MS; Sorger PK; Semenov YR
    Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38701421
    [TBL] [Abstract][Full Text] [Related]  

  • 16. BioKEEN: a library for learning and evaluating biological knowledge graph embeddings.
    Ali M; Hoyt CT; Domingo-Fernández D; Lehmann J; Jabeen H
    Bioinformatics; 2019 Sep; 35(18):3538-3540. PubMed ID: 30768158
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BigDataScript: a scripting language for data pipelines.
    Cingolani P; Sladek R; Blanchette M
    Bioinformatics; 2015 Jan; 31(1):10-6. PubMed ID: 25189778
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Scaling tree-based automated machine learning to biomedical big data with a feature set selector.
    Le TT; Fu W; Moore JH
    Bioinformatics; 2020 Jan; 36(1):250-256. PubMed ID: 31165141
    [TBL] [Abstract][Full Text] [Related]  

  • 19. iLearnPlus: a comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization.
    Chen Z; Zhao P; Li C; Li F; Xiang D; Chen YZ; Akutsu T; Daly RJ; Webb GI; Zhao Q; Kurgan L; Song J
    Nucleic Acids Res; 2021 Jun; 49(10):e60. PubMed ID: 33660783
    [TBL] [Abstract][Full Text] [Related]  

  • 20. VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements.
    Christley S; Scarborough W; Salinas E; Rounds WH; Toby IT; Fonner JM; Levin MK; Kim M; Mock SA; Jordan C; Ostmeyer J; Buntzman A; Rubelt F; Davila ML; Monson NL; Scheuermann RH; Cowell LG
    Front Immunol; 2018; 9():976. PubMed ID: 29867956
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.