197 related articles for article (PubMed ID: 37682473)
21. Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data.
Vorontsov IE; Fedorova AD; Yevshin IS; Sharipov RN; Kolpakov FA; Makeev VJ; Kulakovskiy IV
BMC Res Notes; 2018 Oct; 11(1):756. PubMed ID: 30352610
[TBL] [Abstract][Full Text] [Related]
22. Genome-Wide Transcription Factor DNA Binding Sites and Gene Regulatory Networks in
Hebdon SD; Gerritsen AT; Chen YP; Marcano JG; Chou KJ
Front Microbiol; 2021; 12():695517. PubMed ID: 34566906
[No Abstract] [Full Text] [Related]
23. Statistical estimates of multiple transcription factors binding in the model plant genomes based on ChIP-seq data.
Dergilev AI; Orlova NG; Dobrovolskaya OB; Orlov YL
J Integr Bioinform; 2021 Dec; 19(1):. PubMed ID: 34953471
[TBL] [Abstract][Full Text] [Related]
24. The next generation of transcription factor binding site prediction.
Mathelier A; Wasserman WW
PLoS Comput Biol; 2013; 9(9):e1003214. PubMed ID: 24039567
[TBL] [Abstract][Full Text] [Related]
25. The native cistrome and sequence motif families of the maize ear.
Savadel SD; Hartwig T; Turpin ZM; Vera DL; Lung PY; Sui X; Blank M; Frommer WB; Dennis JH; Zhang J; Bass HW
PLoS Genet; 2021 Aug; 17(8):e1009689. PubMed ID: 34383745
[TBL] [Abstract][Full Text] [Related]
26. ChIP-Seq: a method for global identification of regulatory elements in the genome.
Raha D; Hong M; Snyder M
Curr Protoc Mol Biol; 2010 Jul; Chapter 21():Unit 21.19.1-14. PubMed ID: 20583098
[TBL] [Abstract][Full Text] [Related]
27. COPS: detecting co-occurrence and spatial arrangement of transcription factor binding motifs in genome-wide datasets.
Ha N; Polychronidou M; Lohmann I
PLoS One; 2012; 7(12):e52055. PubMed ID: 23272209
[TBL] [Abstract][Full Text] [Related]
28. Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP).
Kaufmann K; Muiño JM; Østerås M; Farinelli L; Krajewski P; Angenent GC
Nat Protoc; 2010 Mar; 5(3):457-72. PubMed ID: 20203663
[TBL] [Abstract][Full Text] [Related]
29. Molecular and structural considerations of TF-DNA binding for the generation of biologically meaningful and accurate phylogenetic footprinting analysis: the LysR-type transcriptional regulator family as a study model.
Oliver P; Peralta-Gil M; Tabche ML; Merino E
BMC Genomics; 2016 Aug; 17(1):686. PubMed ID: 27567672
[TBL] [Abstract][Full Text] [Related]
30. EAT-UpTF: Enrichment Analysis Tool for Upstream Transcription Factors of a Group of Plant Genes.
Shim S; Seo PJ
Front Genet; 2020; 11():566569. PubMed ID: 33024441
[TBL] [Abstract][Full Text] [Related]
31. RicetissueTFDB: A Genome-Wide Identification of Tissue-Specific Transcription Factors in Rice.
Chen W; Chen Z; Luo F; Liao M; Wei S; Yang Z; Yang J
Plant Genome; 2019 Mar; 12(1):. PubMed ID: 30951090
[TBL] [Abstract][Full Text] [Related]
32. Accurate prediction of inducible transcription factor binding intensities in vivo.
Guertin MJ; Martins AL; Siepel A; Lis JT
PLoS Genet; 2012; 8(3):e1002610. PubMed ID: 22479205
[TBL] [Abstract][Full Text] [Related]
33. Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.
Mundade R; Ozer HG; Wei H; Prabhu L; Lu T
Cell Cycle; 2014; 13(18):2847-52. PubMed ID: 25486472
[TBL] [Abstract][Full Text] [Related]
34. ChIPulate: A comprehensive ChIP-seq simulation pipeline.
Datta V; Hannenhalli S; Siddharthan R
PLoS Comput Biol; 2019 Mar; 15(3):e1006921. PubMed ID: 30897079
[TBL] [Abstract][Full Text] [Related]
35. Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite.
Wang X; Zhang X
BMC Syst Biol; 2011; 5 Suppl 2(Suppl 2):S3. PubMed ID: 22784574
[TBL] [Abstract][Full Text] [Related]
36. Rare genetic variation at transcription factor binding sites modulates local DNA methylation profiles.
Martin-Trujillo A; Patel N; Richter F; Jadhav B; Garg P; Morton SU; McKean DM; DePalma SR; Goldmuntz E; Gruber D; Kim R; Newburger JW; Porter GA; Giardini A; Bernstein D; Tristani-Firouzi M; Seidman JG; Seidman CE; Chung WK; Gelb BD; Sharp AJ
PLoS Genet; 2020 Nov; 16(11):e1009189. PubMed ID: 33216750
[TBL] [Abstract][Full Text] [Related]
37. The functional consequences of variation in transcription factor binding.
Cusanovich DA; Pavlovic B; Pritchard JK; Gilad Y
PLoS Genet; 2014 Mar; 10(3):e1004226. PubMed ID: 24603674
[TBL] [Abstract][Full Text] [Related]
38. Genomic Footprinting Analyses from DNase-seq Data to Construct Gene Regulatory Networks.
Moyano TC; Gutiérrez RA; Alvarez JM
Methods Mol Biol; 2021; 2328():25-46. PubMed ID: 34251618
[TBL] [Abstract][Full Text] [Related]
39. UniBind: maps of high-confidence direct TF-DNA interactions across nine species.
Puig RR; Boddie P; Khan A; Castro-Mondragon JA; Mathelier A
BMC Genomics; 2021 Jun; 22(1):482. PubMed ID: 34174819
[TBL] [Abstract][Full Text] [Related]
40. Genome-wide identification of transcription factor-binding sites in plants using chromatin immunoprecipitation followed by microarray (ChIP-chip) or sequencing (ChIP-seq).
Zhu JY; Sun Y; Wang ZY
Methods Mol Biol; 2012; 876():173-88. PubMed ID: 22576095
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
