BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

129 related articles for article (PubMed ID: 37682474)

  • 1. Estimating DNA-Binding Specificities of Transcription Factors Using SELEX-Seq.
    Chen P; Smaczniak C; Haffner J; Muino JM; Kaufmann K
    Methods Mol Biol; 2023; 2698():147-161. PubMed ID: 37682474
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SELEX-Seq: A Method to Determine DNA Binding Specificities of Plant Transcription Factors.
    Smaczniak C; Angenent GC; Kaufmann K
    Methods Mol Biol; 2017; 1629():67-82. PubMed ID: 28623580
    [TBL] [Abstract][Full Text] [Related]  

  • 3. High-Throughput Protein Production Combined with High- Throughput SELEX Identifies an Extensive Atlas of Ciona robusta Transcription Factor DNA-Binding Specificities.
    Nitta KR; Vincentelli R; Jacox E; Cimino A; Ohtsuka Y; Sobral D; Satou Y; Cambillau C; Lemaire P
    Methods Mol Biol; 2019; 2025():487-517. PubMed ID: 31267468
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities.
    Jolma A; Kivioja T; Toivonen J; Cheng L; Wei G; Enge M; Taipale M; Vaquerizas JM; Yan J; Sillanpää MJ; Bonke M; Palin K; Talukder S; Hughes TR; Luscombe NM; Ukkonen E; Taipale J
    Genome Res; 2010 Jun; 20(6):861-73. PubMed ID: 20378718
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SELEX-seq: a method for characterizing the complete repertoire of binding site preferences for transcription factor complexes.
    Riley TR; Slattery M; Abe N; Rastogi C; Liu D; Mann RS; Bussemaker HJ
    Methods Mol Biol; 2014; 1196():255-78. PubMed ID: 25151169
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An improved SELEX-Seq strategy for characterizing DNA-binding specificity of transcription factor: NF-κB as an example.
    Gu G; Wang T; Yang Y; Xu X; Wang J
    PLoS One; 2013; 8(10):e76109. PubMed ID: 24130762
    [TBL] [Abstract][Full Text] [Related]  

  • 7. High-throughput SELEX determination of DNA sequences bound by transcription factors in vitro.
    Ogawa N; Biggin MD
    Methods Mol Biol; 2012; 786():51-63. PubMed ID: 21938619
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SELEX (Systematic Evolution of Ligands by EXponential Enrichment), as a powerful tool for deciphering the protein-DNA interaction space.
    Chai C; Xie Z; Grotewold E
    Methods Mol Biol; 2011; 754():249-58. PubMed ID: 21720957
    [TBL] [Abstract][Full Text] [Related]  

  • 9. BEESEM: estimation of binding energy models using HT-SELEX data.
    Ruan S; Swamidass SJ; Stormo GD
    Bioinformatics; 2017 Aug; 33(15):2288-2295. PubMed ID: 28379348
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Better estimation of protein-DNA interaction parameters improve prediction of functional sites.
    Nagaraj VH; O'Flanagan RA; Sengupta AM
    BMC Biotechnol; 2008 Dec; 8():94. PubMed ID: 19105805
    [TBL] [Abstract][Full Text] [Related]  

  • 11. DNA-binding specificities of human transcription factors.
    Jolma A; Yan J; Whitington T; Toivonen J; Nitta KR; Rastas P; Morgunova E; Enge M; Taipale M; Wei G; Palin K; Vaquerizas JM; Vincentelli R; Luscombe NM; Hughes TR; Lemaire P; Ukkonen E; Kivioja T; Taipale J
    Cell; 2013 Jan; 152(1-2):327-39. PubMed ID: 23332764
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Evaluating a linear k-mer model for protein-DNA interactions using high-throughput SELEX data.
    Kähärä J; Lähdesmäki H
    BMC Bioinformatics; 2013; 14 Suppl 10(Suppl 10):S2. PubMed ID: 24267147
    [TBL] [Abstract][Full Text] [Related]  

  • 13. In vitro DNA-binding profile of transcription factors: methods and new insights.
    Wang J; Lu J; Gu G; Liu Y
    J Endocrinol; 2011 Jul; 210(1):15-27. PubMed ID: 21389103
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Context-Dependent Gene Regulation by Homeodomain Transcription Factor Complexes Revealed by Shape-Readout Deficient Proteins.
    Kribelbauer JF; Loker RE; Feng S; Rastogi C; Abe N; Rube HT; Bussemaker HJ; Mann RS
    Mol Cell; 2020 Apr; 78(1):152-167.e11. PubMed ID: 32053778
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Differences in DNA Binding Specificity of Floral Homeotic Protein Complexes Predict Organ-Specific Target Genes.
    Smaczniak C; Muiño JM; Chen D; Angenent GC; Kaufmann K
    Plant Cell; 2017 Aug; 29(8):1822-1835. PubMed ID: 28733422
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Quantitative modeling of transcription factor binding specificities using DNA shape.
    Zhou T; Shen N; Yang L; Abe N; Horton J; Mann RS; Bussemaker HJ; Gordân R; Rohs R
    Proc Natl Acad Sci U S A; 2015 Apr; 112(15):4654-9. PubMed ID: 25775564
    [TBL] [Abstract][Full Text] [Related]  

  • 17. [DNA-binding profiles of mammalian transcription factors].
    Gu GM; Wang JK
    Yi Chuan; 2012 Aug; 34(8):950-68. PubMed ID: 22917900
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genome-wide Profiling of Transcription Factor-DNA Binding Interactions in Candida albicans: A Comprehensive CUT&RUN Method and Data Analysis Workflow.
    Qasim MN; Valle Arevalo A; Paropkari AD; Ennis CL; Sindi SS; Nobile CJ; Hernday AD
    J Vis Exp; 2022 Apr; (182):. PubMed ID: 35435920
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Commercial ChIP-Seq Library Preparation Kits Performed Differently for Different Classes of Protein Targets.
    Simper MS; Coletta LD; Gaddis S; Lin K; Mikulec CD; Takata T; Tomida MW; Zhang D; Tang DG; Estecio MR; Shen J; Lu Y
    J Biomol Tech; 2022 Oct; 33(3):. PubMed ID: 36910579
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data.
    Orenstein Y; Shamir R
    Nucleic Acids Res; 2014 Apr; 42(8):e63. PubMed ID: 24500199
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.