211 related articles for article (PubMed ID: 37682477)
21. Inferring the regulatory interaction models of transcription factors in transcriptional regulatory networks.
Awad S; Panchy N; Ng SK; Chen J
J Bioinform Comput Biol; 2012 Oct; 10(5):1250012. PubMed ID: 22849367
[TBL] [Abstract][Full Text] [Related]
22. TF-Cluster: a pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM).
Nie J; Stewart R; Zhang H; Thomson JA; Ruan F; Cui X; Wei H
BMC Syst Biol; 2011 Apr; 5():53. PubMed ID: 21496241
[TBL] [Abstract][Full Text] [Related]
23. Integration of Genome-Wide TF Binding and Gene Expression Data to Characterize Gene Regulatory Networks in Plant Development.
Chen D; Kaufmann K
Methods Mol Biol; 2017; 1629():239-269. PubMed ID: 28623590
[TBL] [Abstract][Full Text] [Related]
24. TF-finder: a software package for identifying transcription factors involved in biological processes using microarray data and existing knowledge base.
Cui X; Wang T; Chen HS; Busov V; Wei H
BMC Bioinformatics; 2010 Aug; 11():425. PubMed ID: 20704747
[TBL] [Abstract][Full Text] [Related]
25. Identification of transcription factor's targets using tissue-specific transcriptomic data in Arabidopsis thaliana.
Srivastava GP; Li P; Liu J; Xu D
BMC Syst Biol; 2010 Sep; 4 Suppl 2(Suppl 2):S2. PubMed ID: 20840729
[TBL] [Abstract][Full Text] [Related]
26. Identification of context-specific gene regulatory networks with GEMULA--gene expression modeling using LAsso.
Geeven G; van Kesteren RE; Smit AB; de Gunst MC
Bioinformatics; 2012 Jan; 28(2):214-21. PubMed ID: 22106333
[TBL] [Abstract][Full Text] [Related]
27. Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions.
Zhou P; Li Z; Magnusson E; Gomez Cano F; Crisp PA; Noshay JM; Grotewold E; Hirsch CN; Briggs SP; Springer NM
Plant Cell; 2020 May; 32(5):1377-1396. PubMed ID: 32184350
[TBL] [Abstract][Full Text] [Related]
28. Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions.
Brooks MD; Cirrone J; Pasquino AV; Alvarez JM; Swift J; Mittal S; Juang CL; Varala K; Gutiérrez RA; Krouk G; Shasha D; Coruzzi GM
Nat Commun; 2019 Apr; 10(1):1569. PubMed ID: 30952851
[TBL] [Abstract][Full Text] [Related]
29. Inferring functional transcription factor-gene binding pairs by integrating transcription factor binding data with transcription factor knockout data.
Yang TH; Wu WS
BMC Syst Biol; 2013; 7 Suppl 6(Suppl 6):S13. PubMed ID: 24565265
[TBL] [Abstract][Full Text] [Related]
30. TFTG: A comprehensive database for human transcription factors and their targets.
Zhou X; Zhou L; Qian F; Chen J; Zhang Y; Yu Z; Zhang J; Yang Y; Li Y; Song C; Wang Y; Shang D; Dong L; Zhu J; Li C; Wang Q
Comput Struct Biotechnol J; 2024 Dec; 23():1877-1885. PubMed ID: 38707542
[TBL] [Abstract][Full Text] [Related]
31. Inference of plant gene regulatory networks using data-driven methods: A practical overview.
Kulkarni SR; Vandepoele K
Biochim Biophys Acta Gene Regul Mech; 2020 Jun; 1863(6):194447. PubMed ID: 31678628
[TBL] [Abstract][Full Text] [Related]
32. MINI-AC: inference of plant gene regulatory networks using bulk or single-cell accessible chromatin profiles.
Manosalva Pérez N; Ferrari C; Engelhorn J; Depuydt T; Nelissen H; Hartwig T; Vandepoele K
Plant J; 2024 Jan; 117(1):280-301. PubMed ID: 37788349
[TBL] [Abstract][Full Text] [Related]
33. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights.
Gordân R; Murphy KF; McCord RP; Zhu C; Vedenko A; Bulyk ML
Genome Biol; 2011 Dec; 12(12):R125. PubMed ID: 22189060
[TBL] [Abstract][Full Text] [Related]
34. Inferring microRNA and transcription factor regulatory networks in heterogeneous data.
Le TD; Liu L; Liu B; Tsykin A; Goodall GJ; Satou K; Li J
BMC Bioinformatics; 2013 Mar; 14():92. PubMed ID: 23497388
[TBL] [Abstract][Full Text] [Related]
35. A novel framework for inferring condition-specific TF and miRNA co-regulation of protein-protein interactions.
Zhang J; Le TD; Liu L; He J; Li J
Gene; 2016 Feb; 577(1):55-64. PubMed ID: 26611531
[TBL] [Abstract][Full Text] [Related]
36. PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants.
Chow CN; Zheng HQ; Wu NY; Chien CH; Huang HD; Lee TY; Chiang-Hsieh YF; Hou PF; Yang TY; Chang WC
Nucleic Acids Res; 2016 Jan; 44(D1):D1154-60. PubMed ID: 26476450
[TBL] [Abstract][Full Text] [Related]
37. Systematic target function annotation of human transcription factors.
Li YF; Altman RB
BMC Biol; 2018 Jan; 16(1):4. PubMed ID: 29325558
[TBL] [Abstract][Full Text] [Related]
38. ModEx: A text mining system for extracting mode of regulation of transcription factor-gene regulatory interaction.
Farahmand S; Riley T; Zarringhalam K
J Biomed Inform; 2020 Feb; 102():103353. PubMed ID: 31857203
[TBL] [Abstract][Full Text] [Related]
39. ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements.
Chen X; Neuwald AF; Hilakivi-Clarke L; Clarke R; Xuan J
PLoS Comput Biol; 2021 Jul; 17(7):e1009203. PubMed ID: 34292930
[TBL] [Abstract][Full Text] [Related]
40. Systematic identification of yeast cell cycle transcription factors using multiple data sources.
Wu WS; Li WH
BMC Bioinformatics; 2008 Dec; 9():522. PubMed ID: 19061501
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]