BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

174 related articles for article (PubMed ID: 37686234)

  • 1. Modeling Side Chains in the Three-Dimensional Structure of Proteins for Post-Translational Modifications.
    Petrovskiy DV; Nikolsky KS; Rudnev VR; Kulikova LI; Butkova TV; Malsagova KA; Kopylov AT; Kaysheva AL
    Int J Mol Sci; 2023 Aug; 24(17):. PubMed ID: 37686234
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Incorporating post-translational modifications and unnatural amino acids into high-throughput modeling of protein structures.
    Nagata K; Randall A; Baldi P
    Bioinformatics; 2014 Jun; 30(12):1681-9. PubMed ID: 24574112
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact.
    Li F; Fan C; Marquez-Lago TT; Leier A; Revote J; Jia C; Zhu Y; Smith AI; Webb GI; Liu Q; Wei L; Li J; Song J
    Brief Bioinform; 2020 May; 21(3):1069-1079. PubMed ID: 31161204
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Investigation and identification of functional post-translational modification sites associated with drug binding and protein-protein interactions.
    Su MG; Weng JT; Hsu JB; Huang KY; Chi YH; Lee TY
    BMC Syst Biol; 2017 Dec; 11(Suppl 7):132. PubMed ID: 29322920
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins.
    Craveur P; Rebehmed J; de Brevern AG
    Database (Oxford); 2014; 2014():. PubMed ID: 24857970
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Vienna-PTM web server: a toolkit for MD simulations of protein post-translational modifications.
    Margreitter C; Petrov D; Zagrovic B
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W422-6. PubMed ID: 23703210
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A Curated Rotamer Library for Common Post-Translational Modifications of Proteins.
    Zhang O; Naik SA; Liu ZH; Forman-Kay J; Head-Gordon T
    ArXiv; 2024 May; ():. PubMed ID: 38764597
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Current status of PTMs structural databases: applications, limitations and prospects.
    de Brevern AG; Rebehmed J
    Amino Acids; 2022 Apr; 54(4):575-590. PubMed ID: 35020020
    [TBL] [Abstract][Full Text] [Related]  

  • 9. dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins.
    Huang KY; Su MG; Kao HJ; Hsieh YC; Jhong JH; Cheng KH; Huang HD; Lee TY
    Nucleic Acids Res; 2016 Jan; 44(D1):D435-46. PubMed ID: 26578568
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Systematic analysis of non-structural protein features for the prediction of PTM function potential by artificial neural networks.
    Dewhurst HM; Torres MP
    PLoS One; 2017; 12(2):e0172572. PubMed ID: 28225828
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PTM-Psi: A python package to facilitate the computational investigation of post-translational modification on protein structures and their impacts on dynamics and functions.
    Mejia-Rodriguez D; Kim H; Sadler N; Li X; Bohutskyi P; Valiev M; Qian WJ; Cheung MS
    Protein Sci; 2023 Dec; 32(12):e4822. PubMed ID: 37902126
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Enhanced Global Post-translational Modification Discovery with MetaMorpheus.
    Solntsev SK; Shortreed MR; Frey BL; Smith LM
    J Proteome Res; 2018 May; 17(5):1844-1851. PubMed ID: 29578715
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MAPRes: Mining association patterns among preferred amino acid residues in the vicinity of amino acids targeted for post-translational modifications.
    Ahmad I; Qazi WM; Khurshid A; Ahmad M; Hoessli DC; Khawaja I; Choudhary MI; Shakoori AR;
    Proteomics; 2008 May; 8(10):1954-8. PubMed ID: 18491291
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A comprehensive review of the imbalance classification of protein post-translational modifications.
    Dou L; Yang F; Xu L; Zou Q
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33834199
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A machine learning strategy for predicting localization of post-translational modification sites in protein-protein interacting regions.
    Saethang T; Payne DM; Avihingsanon Y; Pisitkun T
    BMC Bioinformatics; 2016 Aug; 17(1):307. PubMed ID: 27534850
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Identification of post-translational modifications via blind search of mass-spectra.
    Tsur D; Tanner S; Zandi E; Bafna V; Pevzner PA
    Proc IEEE Comput Syst Bioinform Conf; 2005; ():157-66. PubMed ID: 16447973
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Software eyes for protein post-translational modifications.
    Na S; Paek E
    Mass Spectrom Rev; 2015; 34(2):133-47. PubMed ID: 24889695
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MSModDetector: a tool for detecting mass shifts and post-translational modifications in individual ion mass spectrometry data.
    Faizi M; Fellers RT; Lu D; Drown BS; Jambhekar A; Lahav G; Kelleher NL; Gunawardena J
    Bioinformatics; 2024 Jun; 40(6):. PubMed ID: 38796681
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Post-translational modifications induce significant yet not extreme changes to protein structure.
    Xin F; Radivojac P
    Bioinformatics; 2012 Nov; 28(22):2905-13. PubMed ID: 22947645
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PhoglyStruct: Prediction of phosphoglycerylated lysine residues using structural properties of amino acids.
    Chandra A; Sharma A; Dehzangi A; Ranganathan S; Jokhan A; Chou KC; Tsunoda T
    Sci Rep; 2018 Dec; 8(1):17923. PubMed ID: 30560923
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.