BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

146 related articles for article (PubMed ID: 37711184)

  • 1. Proteome deconvolution of liver biopsies reveals hepatic cell composition as an important marker of fibrosis.
    Handin N; Yuan D; Ölander M; Wegler C; Karlsson C; Jansson-Löfmark R; Hjelmesæth J; Åsberg A; Lauschke VM; Artursson P
    Comput Struct Biotechnol J; 2023; 21():4361-4369. PubMed ID: 37711184
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Multimodal joint deconvolution and integrative signature selection in proteomics.
    Pan Y; Wang X; Sun J; Liu C; Peng J; Li Q
    Commun Biol; 2024 Apr; 7(1):493. PubMed ID: 38658803
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Cooperation of liver cells in health and disease.
    Kmieć Z
    Adv Anat Embryol Cell Biol; 2001; 161():III-XIII, 1-151. PubMed ID: 11729749
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comparative Analysis of Cell Mixtures Deconvolution and Gene Signatures Generated for Blood, Immune and Cancer Cells.
    Alonso-Moreda N; Berral-González A; De La Rosa E; González-Velasco O; Sánchez-Santos JM; De Las Rivas J
    Int J Mol Sci; 2023 Jun; 24(13):. PubMed ID: 37445946
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Improved cell composition deconvolution method of bulk gene expression profiles to quantify subsets of immune cells.
    Chiu YJ; Hsieh YH; Huang YH
    BMC Med Genomics; 2019 Dec; 12(Suppl 8):169. PubMed ID: 31856824
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Endometrial receptivity revisited: endometrial transcriptome adjusted for tissue cellular heterogeneity.
    Suhorutshenko M; Kukushkina V; Velthut-Meikas A; Altmäe S; Peters M; Mägi R; Krjutškov K; Koel M; Codoñer FM; Martinez-Blanch JF; Vilella F; Simón C; Salumets A; Laisk T
    Hum Reprod; 2018 Nov; 33(11):2074-2086. PubMed ID: 30295736
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Rat Deconvolution as Knowledge Miner for Immune Cell Trafficking from Toxicogenomics Databases.
    Morita K; Mizuno T; Azuma I; Suzuki Y; Kusuhara H
    Toxicol Sci; 2023 Nov; 197(2):121-31. PubMed ID: 37941435
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Molecular characterization and cell type composition deconvolution of fibrosis in NAFLD.
    Pantano L; Agyapong G; Shen Y; Zhuo Z; Fernandez-Albert F; Rust W; Knebel D; Hill J; Boustany-Kari CM; Doerner JF; Rippmann JF; Chung RT; Ho Sui SJ; Simon E; Corey KE
    Sci Rep; 2021 Sep; 11(1):18045. PubMed ID: 34508113
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Semi-CAM: A semi-supervised deconvolution method for bulk transcriptomic data with partial marker gene information.
    Dong L; Kollipara A; Darville T; Zou F; Zheng X
    Sci Rep; 2020 Mar; 10(1):5434. PubMed ID: 32214192
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Complete deconvolution of cellular mixtures based on linearity of transcriptional signatures.
    Zaitsev K; Bambouskova M; Swain A; Artyomov MN
    Nat Commun; 2019 May; 10(1):2209. PubMed ID: 31101809
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data.
    Kang K; Meng Q; Shats I; Umbach DM; Li M; Li Y; Li X; Li L
    PLoS Comput Biol; 2019 Dec; 15(12):e1007510. PubMed ID: 31790389
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Investigation of the usefulness of liver-specific deconvolution method by establishing a liver benchmark dataset.
    Azuma I; Mizuno T; Morita K; Suzuki Y; Kusuhara H
    NAR Genom Bioinform; 2024 Mar; 6(1):lqad111. PubMed ID: 38187088
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes.
    Cobos FA; Panah MJN; Epps J; Long X; Man TK; Chiu HS; Chomsky E; Kiner E; Krueger MJ; di Bernardo D; Voloch L; Molenaar J; van Hooff SR; Westermann F; Jansky S; Redell ML; Mestdagh P; Sumazin P
    Genome Biol; 2023 Aug; 24(1):177. PubMed ID: 37528411
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Deblender: a semi-/unsupervised multi-operational computational method for complete deconvolution of expression data from heterogeneous samples.
    Dimitrakopoulou K; Wik E; Akslen LA; Jonassen I
    BMC Bioinformatics; 2018 Nov; 19(1):408. PubMed ID: 30404611
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ProteoMixture: A cell type deconvolution tool for bulk tissue proteomic data.
    Teng PN; Schaaf JP; Abulez T; Hood BL; Wilson KN; Litzi TJ; Mitchell D; Conrads KA; Hunt AL; Olowu V; Oliver J; Park FS; Edwards M; Chiang A; Wilkerson MD; Raj-Kumar PK; Tarney CM; Darcy KM; Phippen NT; Maxwell GL; Conrads TP; Bateman NW
    iScience; 2024 Mar; 27(3):109198. PubMed ID: 38439970
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Single cell transcriptomics in human osteoarthritis synovium and in silico deconvoluted bulk RNA sequencing.
    Huang ZY; Luo ZY; Cai YR; Chou CH; Yao ML; Pei FX; Kraus VB; Zhou ZK
    Osteoarthritis Cartilage; 2022 Mar; 30(3):475-480. PubMed ID: 34971754
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Deconvolution of cellular subsets in human tissue based on targeted DNA methylation analysis at individual CpG sites.
    Schmidt M; Maié T; Dahl E; Costa IG; Wagner W
    BMC Biol; 2020 Nov; 18(1):178. PubMed ID: 33234153
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identification of Putative Early Atherosclerosis Biomarkers by Unsupervised Deconvolution of Heterogeneous Vascular Proteomes.
    Parker SJ; Chen L; Spivia W; Saylor G; Mao C; Venkatraman V; Holewinski RJ; Mastali M; Pandey R; Athas G; Yu G; Fu Q; Troxlair D; Vander Heide R; Herrington D; Van Eyk JE; Wang Y
    J Proteome Res; 2020 Jul; 19(7):2794-2806. PubMed ID: 32202800
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Deconvolution of bulk gene expression profiles reveals the association between immune cell polarization and the prognosis of hepatocellular carcinoma patients.
    Chiu YJ; Ni CE; Huang YH
    Cancer Med; 2023 Jul; 12(14):15736-15760. PubMed ID: 37366298
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Dynamic human liver proteome atlas reveals functional insights into disease pathways.
    Niu L; Geyer PE; Gupta R; Santos A; Meier F; Doll S; Wewer Albrechtsen NJ; Klein S; Ortiz C; Uschner FE; Schierwagen R; Trebicka J; Mann M
    Mol Syst Biol; 2022 May; 18(5):e10947. PubMed ID: 35579278
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.