192 related articles for article (PubMed ID: 37721643)
1. Topological reorganization and functional alteration of distinct genomic components in gallbladder cancer.
Li G; Pu P; Pan M; Weng X; Qiu S; Li Y; Abbas SJ; Zou L; Liu K; Wang Z; Shao Z; Jiang L; Wu W; Liu Y; Shao R; Liu F; Liu Y
Front Med; 2024 Feb; 18(1):109-127. PubMed ID: 37721643
[TBL] [Abstract][Full Text] [Related]
2. Integrative characterization of G-Quadruplexes in the three-dimensional chromatin structure.
Hou Y; Li F; Zhang R; Li S; Liu H; Qin ZS; Sun X
Epigenetics; 2019 Sep; 14(9):894-911. PubMed ID: 31177910
[TBL] [Abstract][Full Text] [Related]
3. 5C analysis of the Epidermal Differentiation Complex locus reveals distinct chromatin interaction networks between gene-rich and gene-poor TADs in skin epithelial cells.
Poterlowicz K; Yarker JL; Malashchuk I; Lajoie BR; Mardaryev AN; Gdula MR; Sharov AA; Kohwi-Shigematsu T; Botchkarev VA; Fessing MY
PLoS Genet; 2017 Sep; 13(9):e1006966. PubMed ID: 28863138
[TBL] [Abstract][Full Text] [Related]
4. Contribution of transposable elements and distal enhancers to evolution of human-specific features of interphase chromatin architecture in embryonic stem cells.
Glinsky GV
Chromosome Res; 2018 Mar; 26(1-2):61-84. PubMed ID: 29335803
[TBL] [Abstract][Full Text] [Related]
5. Multiple CTCF sites cooperate with each other to maintain a TAD for enhancer-promoter interaction in the β-globin locus.
Kang J; Kim YW; Park S; Kang Y; Kim A
FASEB J; 2021 Aug; 35(8):e21768. PubMed ID: 34245617
[TBL] [Abstract][Full Text] [Related]
6. KSHV Topologically Associating Domains in Latent and Reactivated Viral Chromatin.
Campbell M; Chantarasrivong C; Yanagihashi Y; Inagaki T; Davis RR; Nakano K; Kumar A; Tepper CG; Izumiya Y
J Virol; 2022 Jul; 96(14):e0056522. PubMed ID: 35867573
[TBL] [Abstract][Full Text] [Related]
7. Three-dimensional genome landscape comprehensively reveals patterns of spatial gene regulation in papillary and anaplastic thyroid cancers: a study using representative cell lines for each cancer type.
Zhang L; Xu M; Zhang W; Zhu C; Cui Z; Fu H; Ma Y; Huang S; Cui J; Liang S; Huang L; Wang H
Cell Mol Biol Lett; 2023 Jan; 28(1):1. PubMed ID: 36609218
[TBL] [Abstract][Full Text] [Related]
8. ClusterTAD: an unsupervised machine learning approach to detecting topologically associated domains of chromosomes from Hi-C data.
Oluwadare O; Cheng J
BMC Bioinformatics; 2017 Nov; 18(1):480. PubMed ID: 29137603
[TBL] [Abstract][Full Text] [Related]
9. Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders.
Uusküla-Reimand L; Hou H; Samavarchi-Tehrani P; Rudan MV; Liang M; Medina-Rivera A; Mohammed H; Schmidt D; Schwalie P; Young EJ; Reimand J; Hadjur S; Gingras AC; Wilson MD
Genome Biol; 2016 Aug; 17(1):182. PubMed ID: 27582050
[TBL] [Abstract][Full Text] [Related]
10. Reorganization of 3D chromatin architecture in doxorubicin-resistant breast cancer cells.
Wang X; Yan J; Ye Z; Zhang Z; Wang S; Hao S; Shen B; Wei G
Front Cell Dev Biol; 2022; 10():974750. PubMed ID: 36003143
[No Abstract] [Full Text] [Related]
11. Three-dimensional genome architectural CCCTC-binding factor makes choice in duplicated enhancers at Pcdhα locus.
Wu Y; Jia Z; Ge X; Wu Q
Sci China Life Sci; 2020 Jun; 63(6):835-844. PubMed ID: 32249388
[TBL] [Abstract][Full Text] [Related]
12. Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries.
Islam Z; Saravanan B; Walavalkar K; Farooq U; Singh AK; Radhakrishnan S; Thakur J; Pandit A; Henikoff S; Notani D
Genome Res; 2023 Jan; 33(1):1-17. PubMed ID: 36650052
[TBL] [Abstract][Full Text] [Related]
13. HOTTIP-dependent R-loop formation regulates CTCF boundary activity and TAD integrity in leukemia.
Luo H; Zhu G; Eshelman MA; Fung TK; Lai Q; Wang F; Zeisig BB; Lesperance J; Ma X; Chen S; Cesari N; Cogle C; Chen B; Xu B; Yang FC; So CWE; Qiu Y; Xu M; Huang S
Mol Cell; 2022 Feb; 82(4):833-851.e11. PubMed ID: 35180428
[TBL] [Abstract][Full Text] [Related]
14. Making sense of the linear genome, gene function and TADs.
Long HS; Greenaway S; Powell G; Mallon AM; Lindgren CM; Simon MM
Epigenetics Chromatin; 2022 Jan; 15(1):4. PubMed ID: 35090532
[TBL] [Abstract][Full Text] [Related]
15. Genomic meta-analysis of the interplay between 3D chromatin organization and gene expression programs under basal and stress conditions.
Nurick I; Shamir R; Elkon R
Epigenetics Chromatin; 2018 Aug; 11(1):49. PubMed ID: 30157915
[TBL] [Abstract][Full Text] [Related]
16. Tissue-specific CTCF-cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo.
Hanssen LLP; Kassouf MT; Oudelaar AM; Biggs D; Preece C; Downes DJ; Gosden M; Sharpe JA; Sloane-Stanley JA; Hughes JR; Davies B; Higgs DR
Nat Cell Biol; 2017 Aug; 19(8):952-961. PubMed ID: 28737770
[TBL] [Abstract][Full Text] [Related]
17. Large scale genomic reorganization of topological domains at the HoxD locus.
Fabre PJ; Leleu M; Mormann BH; Lopez-Delisle L; Noordermeer D; Beccari L; Duboule D
Genome Biol; 2017 Aug; 18(1):149. PubMed ID: 28784160
[TBL] [Abstract][Full Text] [Related]
18. Genomic Marks Associated with Chromatin Compartments in the CTCF, RNAPII Loop and Genomic Windows.
Szczepińska T; Mollah AF; Plewczynski D
Int J Mol Sci; 2021 Oct; 22(21):. PubMed ID: 34769020
[TBL] [Abstract][Full Text] [Related]
19. Enhancer-promoter interactions can form independently of genomic distance and be functional across TAD boundaries.
Balasubramanian D; Borges Pinto P; Grasso A; Vincent S; Tarayre H; Lajoignie D; Ghavi-Helm Y
Nucleic Acids Res; 2024 Feb; 52(4):1702-1719. PubMed ID: 38084924
[TBL] [Abstract][Full Text] [Related]
20. Nonlinear control of transcription through enhancer-promoter interactions.
Zuin J; Roth G; Zhan Y; Cramard J; Redolfi J; Piskadlo E; Mach P; Kryzhanovska M; Tihanyi G; Kohler H; Eder M; Leemans C; van Steensel B; Meister P; Smallwood S; Giorgetti L
Nature; 2022 Apr; 604(7906):571-577. PubMed ID: 35418676
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
