159 related articles for article (PubMed ID: 37725654)
1. mitoSplitter: A mitochondrial variants-based method for efficient demultiplexing of pooled single-cell RNA-seq.
Lin X; Chen Y; Lin L; Yin K; Cheng R; Lin X; Wang X; Guo Y; Wu Z; Zhang Y; Li J; Yang C; Song J
Proc Natl Acad Sci U S A; 2023 Sep; 120(39):e2307722120. PubMed ID: 37725654
[TBL] [Abstract][Full Text] [Related]
2. deMULTIplex2: robust sample demultiplexing for scRNA-seq.
Zhu Q; Conrad DN; Gartner ZJ
Genome Biol; 2024 Jan; 25(1):37. PubMed ID: 38291503
[TBL] [Abstract][Full Text] [Related]
3. Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference.
Huang Y; McCarthy DJ; Stegle O
Genome Biol; 2019 Dec; 20(1):273. PubMed ID: 31836005
[TBL] [Abstract][Full Text] [Related]
4. Genotype-free demultiplexing of pooled single-cell RNA-seq.
Xu J; Falconer C; Nguyen Q; Crawford J; McKinnon BD; Mortlock S; Senabouth A; Andersen S; Chiu HS; Jiang L; Palpant NJ; Yang J; Mueller MD; Hewitt AW; Pébay A; Montgomery GW; Powell JE; Coin LJM
Genome Biol; 2019 Dec; 20(1):290. PubMed ID: 31856883
[TBL] [Abstract][Full Text] [Related]
5. LINEAGE: Label-free identification of endogenous informative single-cell mitochondrial RNA mutation for lineage analysis.
Lin L; Zhang Y; Qian W; Liu Y; Zhang Y; Lin F; Liu C; Lu G; Sun D; Guo X; Song Y; Song J; Yang C; Li J
Proc Natl Acad Sci U S A; 2022 Feb; 119(5):. PubMed ID: 35086932
[TBL] [Abstract][Full Text] [Related]
6. No detectable alloreactive transcriptional responses under standard sample preparation conditions during donor-multiplexed single-cell RNA sequencing of peripheral blood mononuclear cells.
McGinnis CS; Siegel DA; Xie G; Hartoularos G; Stone M; Ye CJ; Gartner ZJ; Roan NR; Lee SA
BMC Biol; 2021 Jan; 19(1):10. PubMed ID: 33472616
[TBL] [Abstract][Full Text] [Related]
7. Multiplexed bulk and single-cell RNA-seq hybrid enables cost-efficient disease modeling with chimeric organoids.
Cheng C; Wang G; Zhu Y; Wu H; Zhang L; Liu Z; Huang Y; Zhang J
Nat Commun; 2024 May; 15(1):3946. PubMed ID: 38729950
[TBL] [Abstract][Full Text] [Related]
8. A multitask clustering approach for single-cell RNA-seq analysis in Recessive Dystrophic Epidermolysis Bullosa.
Zhang H; Lee CAA; Li Z; Garbe JR; Eide CR; Petegrosso R; Kuang R; Tolar J
PLoS Comput Biol; 2018 Apr; 14(4):e1006053. PubMed ID: 29630593
[TBL] [Abstract][Full Text] [Related]
9. Benchmarking single-cell hashtag oligo demultiplexing methods.
Howitt G; Feng Y; Tobar L; Vassiliadis D; Hickey P; Dawson MA; Ranganathan S; Shanthikumar S; Neeland M; Maksimovic J; Oshlack A
NAR Genom Bioinform; 2023 Dec; 5(4):lqad086. PubMed ID: 37829177
[TBL] [Abstract][Full Text] [Related]
10. Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes.
Heaton H; Talman AM; Knights A; Imaz M; Gaffney DJ; Durbin R; Hemberg M; Lawniczak MKN
Nat Methods; 2020 Jun; 17(6):615-620. PubMed ID: 32366989
[TBL] [Abstract][Full Text] [Related]
11. An integrated single-cell transcriptomic dataset for non-small cell lung cancer.
Prazanowska KH; Lim SB
Sci Data; 2023 Mar; 10(1):167. PubMed ID: 36973297
[TBL] [Abstract][Full Text] [Related]
12. CIForm as a Transformer-based model for cell-type annotation of large-scale single-cell RNA-seq data.
Xu J; Zhang A; Liu F; Chen L; Zhang X
Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37200157
[TBL] [Abstract][Full Text] [Related]
13. A risk-reward examination of sample multiplexing reagents for single cell RNA-Seq.
Brown DV; Anttila CJA; Ling L; Grave P; Baldwin TM; Munnings R; Farchione AJ; Bryant VL; Dunstone A; Biben C; Taoudi S; Weber TS; Naik SH; Hadla A; Barker HE; Vandenberg CJ; Dall G; Scott CL; Moore Z; Whittle JR; Freytag S; Best SA; Papenfuss AT; Olechnowicz SWZ; MacRaild SE; Wilcox S; Hickey PF; Amann-Zalcenstein D; Bowden R
Genomics; 2024 Mar; 116(2):110793. PubMed ID: 38220132
[TBL] [Abstract][Full Text] [Related]
14. Identification of cell barcodes from long-read single-cell RNA-seq with BLAZE.
You Y; Prawer YDJ; De Paoli-Iseppi R; Hunt CPJ; Parish CL; Shim H; Clark MB
Genome Biol; 2023 Apr; 24(1):66. PubMed ID: 37024980
[TBL] [Abstract][Full Text] [Related]
15. Multiplexed single-cell RNA-sequencing of mouse thymic and splenic samples.
Pankaew S; Grosjean C; Quessada J; Loosveld M; Potier D; Payet-Bornet D; Nozais M
STAR Protoc; 2021 Dec; 3(1):101041. PubMed ID: 36475567
[TBL] [Abstract][Full Text] [Related]
16. Quality control in scRNA-Seq can discriminate pacemaker cells: the mtRNA bias.
Galow AM; Kussauer S; Wolfien M; Brunner RM; Goldammer T; David R; Hoeflich A
Cell Mol Life Sci; 2021 Oct; 78(19-20):6585-6592. PubMed ID: 34427691
[TBL] [Abstract][Full Text] [Related]
17. Comprehensive analysis of scRNA-Seq and bulk RNA-Seq reveals dynamic changes in the tumor immune microenvironment of bladder cancer and establishes a prognostic model.
Tan Z; Chen X; Zuo J; Fu S; Wang H; Wang J
J Transl Med; 2023 Mar; 21(1):223. PubMed ID: 36973787
[TBL] [Abstract][Full Text] [Related]
18. scAVENGERS: a genotype-based deconvolution of individuals in multiplexed single-cell ATAC-seq data without reference genotypes.
Han S; Kim K; Park S; Lee AJ; Chun H; Jung I
NAR Genom Bioinform; 2022 Dec; 4(4):lqac095. PubMed ID: 36601579
[TBL] [Abstract][Full Text] [Related]
19. MLSpatial: A machine-learning method to reconstruct the spatial distribution of cells from scRNA-seq by extracting spatial features.
Zhu M; Li C; Lv K; Guo H; Hou R; Tian G; Yang J
Comput Biol Med; 2023 Jun; 159():106873. PubMed ID: 37105115
[TBL] [Abstract][Full Text] [Related]
20. scGGAN: single-cell RNA-seq imputation by graph-based generative adversarial network.
Huang Z; Wang J; Lu X; Mohd Zain A; Yu G
Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36733262
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
