184 related articles for article (PubMed ID: 37738400)
1. COWID: an efficient cloud-based genomics workflow for scalable identification of SARS-COV-2.
Lim HG; Fann YC; Lee YG
Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37738400
[TBL] [Abstract][Full Text] [Related]
2. Robust Mutation Profiling of SARS-CoV-2 Variants from Multiple Raw Illumina Sequencing Data with Cloud Workflow.
Lim HG; Hsiao SH; Fann YC; Lee YG
Genes (Basel); 2022 Apr; 13(4):. PubMed ID: 35456492
[TBL] [Abstract][Full Text] [Related]
3. CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens.
Bais P; Namburi S; Gatti DM; Zhang X; Chuang JH
Bioinformatics; 2017 Oct; 33(19):3110-3112. PubMed ID: 28605406
[TBL] [Abstract][Full Text] [Related]
4. Orchestrating an Optimized Next-Generation Sequencing-Based Cloud Workflow for Robust Viral Identification during Pandemics.
Lim HG; Hsiao SH; Lee YG
Biology (Basel); 2021 Oct; 10(10):. PubMed ID: 34681121
[TBL] [Abstract][Full Text] [Related]
5. EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts.
Lo CC; Shakya M; Connor R; Davenport K; Flynn M; Gutiérrez AMY; Hu B; Li PE; Jackson EP; Xu Y; Chain PSG
Bioinformatics; 2022 May; 38(10):2700-2704. PubMed ID: 35561186
[TBL] [Abstract][Full Text] [Related]
6. MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants.
Elshazly H; Souilmi Y; Tonellato PJ; Wall DP; Abouelhoda M
BMC Bioinformatics; 2017 Jan; 18(1):49. PubMed ID: 28107819
[TBL] [Abstract][Full Text] [Related]
7. Rapid screening and identification of viral pathogens in metagenomic data.
Song S; Ma L; Xu X; Shi H; Li X; Liu Y; Hao P
BMC Med Genomics; 2021 Dec; 14(Suppl 6):289. PubMed ID: 34903237
[TBL] [Abstract][Full Text] [Related]
8. ViralFlow: A Versatile Automated Workflow for SARS-CoV-2 Genome Assembly, Lineage Assignment, Mutations and Intrahost Variant Detection.
Dezordi FZ; Neto AMDS; Campos TL; Jeronimo PMC; Aksenen CF; Almeida SP; Wallau GL; On Behalf Of The Fiocruz Covid-Genomic Surveillance Network
Viruses; 2022 Jan; 14(2):. PubMed ID: 35215811
[TBL] [Abstract][Full Text] [Related]
9. UnCoVar: a reproducible and scalable workflow for transparent and robust virus variant calling and lineage assignment using SARS-CoV-2 as an example.
Thomas A; Battenfeld T; Kraiselburd I; Anastasiou O; Dittmer U; Dörr AK; Dörr A; Elsner C; Gosch J; Le-Trilling VTK; Magin S; Scholtysik R; Yilmaz P; Trilling M; Schöler L; Köster J; Meyer F
BMC Genomics; 2024 Jun; 25(1):647. PubMed ID: 38943066
[TBL] [Abstract][Full Text] [Related]
10. CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.
Nicholls SM; Poplawski R; Bull MJ; Underwood A; Chapman M; Abu-Dahab K; Taylor B; Colquhoun RM; Rowe WPM; Jackson B; Hill V; O'Toole Á; Rey S; Southgate J; Amato R; Livett R; Gonçalves S; Harrison EM; Peacock SJ; Aanensen DM; Rambaut A; Connor TR; Loman NJ;
Genome Biol; 2021 Jul; 22(1):196. PubMed ID: 34210356
[TBL] [Abstract][Full Text] [Related]
11. STAAR workflow: a cloud-based workflow for scalable and reproducible rare variant analysis.
Gaynor SM; Westerman KE; Ackovic LL; Li X; Li Z; Manning AK; Philippakis A; Lin X
Bioinformatics; 2022 May; 38(11):3116-3117. PubMed ID: 35441669
[TBL] [Abstract][Full Text] [Related]
12. A (fire)cloud-based DNA methylation data preprocessing and quality control platform.
Kangeyan D; Dunford A; Iyer S; Stewart C; Hanna M; Getz G; Aryee MJ
BMC Bioinformatics; 2019 Mar; 20(1):160. PubMed ID: 30922215
[TBL] [Abstract][Full Text] [Related]
13. Identification of SARS-CoV-2 variants using viral sequencing for the Centers for Disease Control and Prevention genomic surveillance program.
Goswami C; Sheldon M; Bixby C; Keddache M; Bogdanowicz A; Wang Y; Schultz J; McDevitt J; LaPorta J; Kwon E; Buyske S; Garbolino D; Biloholowski G; Pastuszak A; Storella M; Bhalla A; Charlier-Rodriguez F; Hager R; Grimwood R; Nahas SA
BMC Infect Dis; 2022 Apr; 22(1):404. PubMed ID: 35468749
[TBL] [Abstract][Full Text] [Related]
14. COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity.
Naumov V; Putin E; Pushkov S; Kozlova E; Romantsov K; Kalashnikov A; Galkin F; Tihonova N; Shneyderman A; Galkin E; Zinkevich A; Cope SM; Sethuraman R; Oprea TI; Pearson AT; Tay S; Agrawal N; Dubovenko A; Vanhaelen Q; Ozerov I; Aliper A; Izumchenko E; Zhavoronkov A
PLoS Comput Biol; 2021 Jul; 17(7):e1009183. PubMed ID: 34260589
[TBL] [Abstract][Full Text] [Related]
15. Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection.
Ohta T; Tanjo T; Ogasawara O
Gigascience; 2019 Apr; 8(4):. PubMed ID: 31222199
[TBL] [Abstract][Full Text] [Related]
16. Closha: bioinformatics workflow system for the analysis of massive sequencing data.
Ko G; Kim PG; Yoon J; Han G; Park SJ; Song W; Lee B
BMC Bioinformatics; 2018 Feb; 19(Suppl 1):43. PubMed ID: 29504905
[TBL] [Abstract][Full Text] [Related]
17. VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements.
Christley S; Scarborough W; Salinas E; Rounds WH; Toby IT; Fonner JM; Levin MK; Kim M; Mock SA; Jordan C; Ostmeyer J; Buntzman A; Rubelt F; Davila ML; Monson NL; Scheuermann RH; Cowell LG
Front Immunol; 2018; 9():976. PubMed ID: 29867956
[TBL] [Abstract][Full Text] [Related]
18. Using the Seven Bridges Cancer Genomics Cloud to Access and Analyze Petabytes of Cancer Data.
Malhotra R; Seth I; Lehnert E; Zhao J; Kaushik G; Williams EH; Sethi A; Davis-Dusenbery BN
Curr Protoc Bioinformatics; 2017 Dec; 60():11.16.1-11.16.32. PubMed ID: 29220078
[TBL] [Abstract][Full Text] [Related]
19. SEAseq: a portable and cloud-based chromatin occupancy analysis suite.
Adetunji MO; Abraham BJ
BMC Bioinformatics; 2022 Feb; 23(1):77. PubMed ID: 35193506
[TBL] [Abstract][Full Text] [Related]
20. PipeCoV: a pipeline for SARS-CoV-2 genome assembly, annotation and variant identification.
Oliveira RRM; Costa Negri T; Nunes G; Medeiros I; Araújo G; de Oliveira Silva F; Estefano Santana de Souza J; Alves R; Oliveira G
PeerJ; 2022; 10():e13300. PubMed ID: 35437474
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
