BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

221 related articles for article (PubMed ID: 37751945)

  • 21. methyl-ATAC-seq measures DNA methylation at accessible chromatin.
    Spektor R; Tippens ND; Mimoso CA; Soloway PD
    Genome Res; 2019 Jun; 29(6):969-977. PubMed ID: 31160376
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Harnessing changes in open chromatin determined by ATAC-seq to generate insulin-responsive reporter constructs.
    Merrill CB; Montgomery AB; Pabon MA; Shabalin AA; Rodan AR; Rothenfluh A
    BMC Genomics; 2022 May; 23(1):399. PubMed ID: 35614386
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Exploring Chromatin Accessibility in Mouse Epiblast Stem Cells with ATAC-Seq.
    Salehin N; Santucci N; Osteil P; Tam PPL
    Methods Mol Biol; 2022; 2490():93-100. PubMed ID: 35486242
    [TBL] [Abstract][Full Text] [Related]  

  • 24. scifi-ATAC-seq: massive-scale single-cell chromatin accessibility sequencing using combinatorial fluidic indexing.
    Zhang X; Marand AP; Yan H; Schmitz RJ
    Genome Biol; 2024 Apr; 25(1):90. PubMed ID: 38589969
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Dissecting the Epigenome Driving Drug Resistance by ATAC-Seq.
    de Nicola F; Corleone G; Goeman F
    Methods Mol Biol; 2022; 2535():171-185. PubMed ID: 35867231
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Chromatin accessibility profiling by ATAC-seq.
    Grandi FC; Modi H; Kampman L; Corces MR
    Nat Protoc; 2022 Jun; 17(6):1518-1552. PubMed ID: 35478247
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.
    Orchard P; Kyono Y; Hensley J; Kitzman JO; Parker SCJ
    Cell Syst; 2020 Mar; 10(3):298-306.e4. PubMed ID: 32213349
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species.
    Huang L; Li X; Dong L; Wang B; Pan L
    BMC Biol; 2021 Sep; 19(1):189. PubMed ID: 34488759
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Chromatin Accessibility Profiling and Data Analysis Using ATAC-seq in
    Reeves GA; Singh PP; Brunet A
    Cold Spring Harb Protoc; 2024 Mar; 2024(3):107747. PubMed ID: 37100469
    [TBL] [Abstract][Full Text] [Related]  

  • 30. ATAC-pipe: general analysis of genome-wide chromatin accessibility.
    Zuo Z; Jin Y; Zhang W; Lu Y; Li B; Qu K
    Brief Bioinform; 2019 Sep; 20(5):1934-1943. PubMed ID: 29982337
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Integrating ATAC-seq and RNA-seq Reveals the Dynamics of Chromatin Accessibility and Gene Expression in Apple Response to Drought.
    Wang S; He J; Deng M; Wang C; Wang R; Yan J; Luo M; Ma F; Guan Q; Xu J
    Int J Mol Sci; 2022 Sep; 23(19):. PubMed ID: 36232500
    [TBL] [Abstract][Full Text] [Related]  

  • 32. GNNMF: a multi-view graph neural network for ATAC-seq motif finding.
    Zhang S; Wu X; Lian Z; Zuo C; Wang Y
    BMC Genomics; 2024 Mar; 25(1):300. PubMed ID: 38515040
    [TBL] [Abstract][Full Text] [Related]  

  • 33. CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis.
    Qiu X; Feit AS; Feiglin A; Xie Y; Kesten N; Taing L; Perkins J; Gu S; Li Y; Cejas P; Zhou N; Jeselsohn R; Brown M; Shirley Liu X; Long HW
    Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):652-661. PubMed ID: 34284136
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Epigenetic Application of ATAC-Seq Based on Tn5 Transposase Purification Technology.
    Li W; Tim Wu U; Cheng Y; Huang Y; Mao L; Sun M; Qiu C; Zhou L; Gao L
    Genet Res (Camb); 2022; 2022():8429207. PubMed ID: 36062065
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Comparison of differential accessibility analysis strategies for ATAC-seq data.
    Gontarz P; Fu S; Xing X; Liu S; Miao B; Bazylianska V; Sharma A; Madden P; Cates K; Yoo A; Moszczynska A; Wang T; Zhang B
    Sci Rep; 2020 Jun; 10(1):10150. PubMed ID: 32576878
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Mapping Genome-wide Accessible Chromatin in Primary Human T Lymphocytes by ATAC-Seq.
    Grbesa I; Tannenbaum M; Sarusi-Portuguez A; Schwartz M; Hakim O
    J Vis Exp; 2017 Nov; (129):. PubMed ID: 29155775
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Assessing Chromatin Accessibility During WBR in Acoels.
    Gehrke AR; Srivastava M
    Methods Mol Biol; 2022; 2450():549-561. PubMed ID: 35359328
    [TBL] [Abstract][Full Text] [Related]  

  • 38. XL-DNase-seq: improved footprinting of dynamic transcription factors.
    Oh KS; Ha J; Baek S; Sung MH
    Epigenetics Chromatin; 2019 Jun; 12(1):30. PubMed ID: 31164146
    [TBL] [Abstract][Full Text] [Related]  

  • 39. ATAC-Seq for Assaying Chromatin Accessibility Protocol Using Echinoderm Embryos.
    Magri MS; Voronov D; Ranđelović J; Cuomo C; Gómez-Skarmeta JL; Arnone MI
    Methods Mol Biol; 2021; 2219():253-265. PubMed ID: 33074546
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Detect accessible chromatin using ATAC-sequencing, from principle to applications.
    Sun Y; Miao N; Sun T
    Hereditas; 2019; 156():29. PubMed ID: 31427911
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 12.