These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

166 related articles for article (PubMed ID: 37762379)

  • 21. Fast and SNP-aware short read alignment with SALT.
    Quan W; Liu B; Wang Y
    BMC Bioinformatics; 2021 Aug; 22(Suppl 9):172. PubMed ID: 34433415
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Comparative study of sequence aligners for detecting antibiotic resistance in bacterial metagenomes.
    McCall C; Xagoraraki I
    Lett Appl Microbiol; 2018 Mar; 66(3):162-168. PubMed ID: 29288551
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Evaluation of tools for long read RNA-seq splice-aware alignment.
    Križanovic K; Echchiki A; Roux J; Šikic M
    Bioinformatics; 2018 Mar; 34(5):748-754. PubMed ID: 29069314
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Demonstrating the utility of flexible sequence queries against indexed short reads with FlexTyper.
    Richmond PA; Kaye AM; Kounkou GJ; Av-Shalom TV; Wasserman WW
    PLoS Comput Biol; 2021 Mar; 17(3):e1008815. PubMed ID: 33750951
    [TBL] [Abstract][Full Text] [Related]  

  • 25. cPlot: Contig-Plotting Visualization for the Analysis of Short-Read Nucleotide Sequence Alignments.
    Ji M; Kan Y; Kim D; Jung J; Yi G
    Int J Mol Sci; 2022 Sep; 23(19):. PubMed ID: 36232783
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Kart: a divide-and-conquer algorithm for NGS read alignment.
    Lin HN; Hsu WL
    Bioinformatics; 2017 Aug; 33(15):2281-2287. PubMed ID: 28379292
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).
    Grant GR; Farkas MH; Pizarro AD; Lahens NF; Schug J; Brunk BP; Stoeckert CJ; Hogenesch JB; Pierce EA
    Bioinformatics; 2011 Sep; 27(18):2518-28. PubMed ID: 21775302
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Strobealign: flexible seed size enables ultra-fast and accurate read alignment.
    Sahlin K
    Genome Biol; 2022 Dec; 23(1):260. PubMed ID: 36522758
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Review of alignment and SNP calling algorithms for next-generation sequencing data.
    Mielczarek M; Szyda J
    J Appl Genet; 2016 Feb; 57(1):71-9. PubMed ID: 26055432
    [TBL] [Abstract][Full Text] [Related]  

  • 30. QAlign: aligning nanopore reads accurately using current-level modeling.
    Joshi D; Mao S; Kannan S; Diggavi S
    Bioinformatics; 2021 May; 37(5):625-633. PubMed ID: 33051648
    [TBL] [Abstract][Full Text] [Related]  

  • 31. A fast read alignment method based on seed-and-vote for next generation sequencing.
    Liu S; Wang Y; Wang F
    BMC Bioinformatics; 2016 Dec; 17(Suppl 17):466. PubMed ID: 28155631
    [TBL] [Abstract][Full Text] [Related]  

  • 32. mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications.
    Hach F; Sarrafi I; Hormozdiari F; Alkan C; Eichler EE; Sahinalp SC
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W494-500. PubMed ID: 24810850
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Faster single-end alignment generation utilizing multi-thread for BWA.
    Jo H; Koh G
    Biomed Mater Eng; 2015; 26 Suppl 1():S1791-6. PubMed ID: 26405948
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Aligner optimization increases accuracy and decreases compute times in multi-species sequence data.
    Robinson KM; Hawkins AS; Santana-Cruz I; Adkins RS; Shetty AC; Nagaraj S; Sadzewicz L; Tallon LJ; Rasko DA; Fraser CM; Mahurkar A; Silva JC; Dunning Hotopp JC
    Microb Genom; 2017 Sep; 3(9):e000122. PubMed ID: 29114401
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Evaluation of methods for detecting human reads in microbial sequencing datasets.
    Bush SJ; Connor TR; Peto TEA; Crook DW; Walker AS
    Microb Genom; 2020 Jul; 6(7):. PubMed ID: 32558637
    [TBL] [Abstract][Full Text] [Related]  

  • 36. From trash to treasure: detecting unexpected contamination in unmapped NGS data.
    Sangiovanni M; Granata I; Thind AS; Guarracino MR
    BMC Bioinformatics; 2019 Apr; 20(Suppl 4):168. PubMed ID: 30999839
    [TBL] [Abstract][Full Text] [Related]  

  • 37. RAMICS: trainable, high-speed and biologically relevant alignment of high-throughput sequencing reads to coding DNA.
    Wright IA; Travers SA
    Nucleic Acids Res; 2014 Jul; 42(13):e106. PubMed ID: 24861618
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Fast and accurate short read alignment with Burrows-Wheeler transform.
    Li H; Durbin R
    Bioinformatics; 2009 Jul; 25(14):1754-60. PubMed ID: 19451168
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Important biological information uncovered in previously unaligned reads from chromatin immunoprecipitation experiments (ChIP-Seq).
    Ouma WZ; Mejia-Guerra MK; Yilmaz A; Pareja-Tobes P; Li W; Doseff AI; Grotewold E
    Sci Rep; 2015 Mar; 5():8635. PubMed ID: 25727450
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A comprehensive evaluation of alignment software for reduced representation bisulfite sequencing data.
    Sun X; Han Y; Zhou L; Chen E; Lu B; Liu Y; Pan X; Cowley AW; Liang M; Wu Q; Lu Y; Liu P
    Bioinformatics; 2018 Aug; 34(16):2715-2723. PubMed ID: 29579198
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.