These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

257 related articles for article (PubMed ID: 37774136)

  • 1. UCSF ChimeraX: Tools for structure building and analysis.
    Meng EC; Goddard TD; Pettersen EF; Couch GS; Pearson ZJ; Morris JH; Ferrin TE
    Protein Sci; 2023 Nov; 32(11):e4792. PubMed ID: 37774136
    [TBL] [Abstract][Full Text] [Related]  

  • 2. UCSF ChimeraX: Structure visualization for researchers, educators, and developers.
    Pettersen EF; Goddard TD; Huang CC; Meng EC; Couch GS; Croll TI; Morris JH; Ferrin TE
    Protein Sci; 2021 Jan; 30(1):70-82. PubMed ID: 32881101
    [TBL] [Abstract][Full Text] [Related]  

  • 3. UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
    Goddard TD; Huang CC; Meng EC; Pettersen EF; Couch GS; Morris JH; Ferrin TE
    Protein Sci; 2018 Jan; 27(1):14-25. PubMed ID: 28710774
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ArtiaX: An electron tomography toolbox for the interactive handling of sub-tomograms in UCSF ChimeraX.
    Ermel UH; Arghittu SM; Frangakis AS
    Protein Sci; 2022 Dec; 31(12):e4472. PubMed ID: 36251681
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Residue-level error detection in cryoelectron microscopy models.
    Reggiano G; Lugmayr W; Farrell D; Marlovits TC; DiMaio F
    Structure; 2023 Jul; 31(7):860-869.e4. PubMed ID: 37253357
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Integrating AlphaFold and deep learning for atomistic interpretation of cryo-EM maps.
    Dai X; Wu L; Yoo S; Liu Q
    Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37982712
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Modeling protein structure at near atomic resolutions with Gorgon.
    Baker ML; Abeysinghe SS; Schuh S; Coleman RA; Abrams A; Marsh MP; Hryc CF; Ruths T; Chiu W; Ju T
    J Struct Biol; 2011 May; 174(2):360-73. PubMed ID: 21296162
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Building and refining protein models within cryo-electron microscopy density maps based on homology modeling and multiscale structure refinement.
    Zhu J; Cheng L; Fang Q; Zhou ZH; Honig B
    J Mol Biol; 2010 Apr; 397(3):835-51. PubMed ID: 20109465
    [TBL] [Abstract][Full Text] [Related]  

  • 9. StarMap: a user-friendly workflow for Rosetta-driven molecular structure refinement.
    Lugmayr W; Kotov V; Goessweiner-Mohr N; Wald J; DiMaio F; Marlovits TC
    Nat Protoc; 2023 Jan; 18(1):239-264. PubMed ID: 36323866
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Cryo-EM of macromolecular assemblies at near-atomic resolution.
    Baker ML; Zhang J; Ludtke SJ; Chiu W
    Nat Protoc; 2010 Sep; 5(10):1697-708. PubMed ID: 20885381
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Model building of protein complexes from intermediate-resolution cryo-EM maps with deep learning-guided automatic assembly.
    He J; Lin P; Chen J; Cao H; Huang SY
    Nat Commun; 2022 Jul; 13(1):4066. PubMed ID: 35831370
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Refinement of Atomic Structures Against cryo-EM Maps.
    Murshudov GN
    Methods Enzymol; 2016; 579():277-305. PubMed ID: 27572731
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Beyond the Backbone: The Next Generation of Pathwalking Utilities for Model Building in CryoEM Density Maps.
    Hryc CF; Baker ML
    Biomolecules; 2022 Jun; 12(6):. PubMed ID: 35740898
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Current approaches for automated model building into cryo-EM maps using Buccaneer with CCP-EM.
    Hoh SW; Burnley T; Cowtan K
    Acta Crystallogr D Struct Biol; 2020 Jun; 76(Pt 6):531-541. PubMed ID: 32496215
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The Phenix-AlphaFold webservice: Enabling AlphaFold predictions for use in Phenix.
    Poon BK; Terwilliger TC; Adams PD
    Protein Sci; 2024 May; 33(5):e4992. PubMed ID: 38647406
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions.
    Brown A; Long F; Nicholls RA; Toots J; Emsley P; Murshudov G
    Acta Crystallogr D Biol Crystallogr; 2015 Jan; 71(Pt 1):136-53. PubMed ID: 25615868
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Protein Structure Modeling from Cryo-EM Map Using MAINMAST and MAINMAST-GUI Plugin.
    Terashi G; Zha Y; Kihara D
    Methods Mol Biol; 2020; 2165():317-336. PubMed ID: 32621234
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CR-I-TASSER: assemble protein structures from cryo-EM density maps using deep convolutional neural networks.
    Zhang X; Zhang B; Freddolino PL; Zhang Y
    Nat Methods; 2022 Feb; 19(2):195-204. PubMed ID: 35132244
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Modeling, docking, and fitting of atomic structures to 3D maps from cryo-electron microscopy.
    Allen GS; Stokes DL
    Methods Mol Biol; 2013; 955():229-41. PubMed ID: 23132064
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Visualizing density maps with UCSF Chimera.
    Goddard TD; Huang CC; Ferrin TE
    J Struct Biol; 2007 Jan; 157(1):281-7. PubMed ID: 16963278
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.