180 related articles for article (PubMed ID: 37791874)
1. High-resolution structure of stem-loop 4 from the 5'-UTR of SARS-CoV-2 solved by solution state NMR.
Vögele J; Hymon D; Martins J; Ferner J; Jonker HRA; Hargrove AE; Weigand JE; Wacker A; Schwalbe H; Wöhnert J; Duchardt-Ferner E
Nucleic Acids Res; 2023 Nov; 51(20):11318-11331. PubMed ID: 37791874
[TBL] [Abstract][Full Text] [Related]
2. High frequency of transition to transversion ratio in the stem region of RNA secondary structure of untranslated region of SARS-CoV-2.
Dash M; Meher P; Aditya Kumar ; Satapathy SS; Namsa ND
PeerJ; 2024; 12():e16962. PubMed ID: 38666080
[TBL] [Abstract][Full Text] [Related]
3.
Vögele J; Ferner JP; Altincekic N; Bains JK; Ceylan B; Fürtig B; Grün JT; Hengesbach M; Hohmann KF; Hymon D; Knezic B; Löhr F; Peter SA; Pyper D; Qureshi NS; Richter C; Schlundt A; Schwalbe H; Stirnal E; Sudakov A; Wacker A; Weigand JE; Wirmer-Bartoschek J; Wöhnert J; Duchardt-Ferner E
Biomol NMR Assign; 2021 Oct; 15(2):335-340. PubMed ID: 33928512
[TBL] [Abstract][Full Text] [Related]
4. Structure of an internal loop motif with three consecutive U•U mismatches from stem-loop 1 in the 3'-UTR of the SARS-CoV-2 genomic RNA.
Vögele J; Duchardt-Ferner E; Bains JK; Knezic B; Wacker A; Sich C; Weigand JE; Šponer J; Schwalbe H; Krepl M; Wöhnert J
Nucleic Acids Res; 2024 Jun; 52(11):6687-6706. PubMed ID: 38783391
[TBL] [Abstract][Full Text] [Related]
5. Conformational Ensembles of Noncoding Elements in the SARS-CoV-2 Genome from Molecular Dynamics Simulations.
Bottaro S; Bussi G; Lindorff-Larsen K
J Am Chem Soc; 2021 Jun; 143(22):8333-8343. PubMed ID: 34039006
[TBL] [Abstract][Full Text] [Related]
6. Exploring the conformational dynamics of the SARS-CoV-2 SL4 hairpin by combining optical tweezers and base analogues.
Sundar Rajan V; Wypijewska Del Nogal A; Levin S; Wilhelmsson LM; Westerlund F
Nanoscale; 2024 Jan; 16(2):752-764. PubMed ID: 38087988
[TBL] [Abstract][Full Text] [Related]
7. NMR characterization and ligand binding site of the stem-loop 2 motif from the Delta variant of SARS-CoV-2.
Matzel T; Martin MW; Herr A; Wacker A; Richter C; Sreeramulu S; Schwalbe H
RNA; 2024 Jun; 30(7):779-794. PubMed ID: 38565242
[TBL] [Abstract][Full Text] [Related]
8. RNA sequence and ligand binding alter conformational profile of SARS-CoV-2 stem loop II motif.
Aldhumani AH; Hossain MI; Fairchild EA; Boesger H; Marino EC; Myers M; Hines JV
Biochem Biophys Res Commun; 2021 Mar; 545():75-80. PubMed ID: 33545635
[TBL] [Abstract][Full Text] [Related]
9. Stem-loop SL4 of the HIV-1 psi RNA packaging signal exhibits weak affinity for the nucleocapsid protein. structural studies and implications for genome recognition.
Amarasinghe GK; Zhou J; Miskimon M; Chancellor KJ; McDonald JA; Matthews AG; Miller RR; Rouse MD; Summers MF
J Mol Biol; 2001 Dec; 314(5):961-70. PubMed ID: 11743714
[TBL] [Abstract][Full Text] [Related]
10.
Schnieders R; Peter SA; Banijamali E; Riad M; Altincekic N; Bains JK; Ceylan B; Fürtig B; Grün JT; Hengesbach M; Hohmann KF; Hymon D; Knezic B; Oxenfarth A; Petzold K; Qureshi NS; Richter C; Schlagnitweit J; Schlundt A; Schwalbe H; Stirnal E; Sudakov A; Vögele J; Wacker A; Weigand JE; Wirmer-Bartoschek J; Wöhnert J
Biomol NMR Assign; 2021 Apr; 15(1):203-211. PubMed ID: 33484403
[TBL] [Abstract][Full Text] [Related]
11. Secondary structure determination of conserved SARS-CoV-2 RNA elements by NMR spectroscopy.
Wacker A; Weigand JE; Akabayov SR; Altincekic N; Bains JK; Banijamali E; Binas O; Castillo-Martinez J; Cetiner E; Ceylan B; Chiu LY; Davila-Calderon J; Dhamotharan K; Duchardt-Ferner E; Ferner J; Frydman L; Fürtig B; Gallego J; Grün JT; Hacker C; Haddad C; Hähnke M; Hengesbach M; Hiller F; Hohmann KF; Hymon D; de Jesus V; Jonker H; Keller H; Knezic B; Landgraf T; Löhr F; Luo L; Mertinkus KR; Muhs C; Novakovic M; Oxenfarth A; Palomino-Schätzlein M; Petzold K; Peter SA; Pyper DJ; Qureshi NS; Riad M; Richter C; Saxena K; Schamber T; Scherf T; Schlagnitweit J; Schlundt A; Schnieders R; Schwalbe H; Simba-Lahuasi A; Sreeramulu S; Stirnal E; Sudakov A; Tants JN; Tolbert BS; Vögele J; Weiß L; Wirmer-Bartoschek J; Wirtz Martin MA; Wöhnert J; Zetzsche H
Nucleic Acids Res; 2020 Dec; 48(22):12415-12435. PubMed ID: 33167030
[TBL] [Abstract][Full Text] [Related]
12. The solution structure of coronaviral stem-loop 2 (SL2) reveals a canonical CUYG tetraloop fold.
Lee CW; Li L; Giedroc DP
FEBS Lett; 2011 Apr; 585(7):1049-53. PubMed ID: 21382373
[TBL] [Abstract][Full Text] [Related]
13. Solution structure of a consensus stem-loop D RNA domain that plays important roles in regulating translation and replication in enteroviruses and rhinoviruses.
Du Z; Yu J; Ulyanov NB; Andino R; James TL
Biochemistry; 2004 Sep; 43(38):11959-72. PubMed ID: 15379536
[TBL] [Abstract][Full Text] [Related]
14. Structure of the SARS-CoV-2 Frameshift Stimulatory Element with an Upstream Multibranch Loop.
Peterson JM; Becker ST; O'Leary CA; Juneja P; Yang Y; Moss WN
Biochemistry; 2024 May; 63(10):1287-1296. PubMed ID: 38727003
[TBL] [Abstract][Full Text] [Related]
15. Crystal structure of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) frameshifting pseudoknot.
Jones CP; Ferré-D'Amaré AR
RNA; 2022 Feb; 28(2):239-249. PubMed ID: 34845084
[TBL] [Abstract][Full Text] [Related]
16. The bifurcated stem loop 4 (SL4) is crucial for efficient packaging of mouse mammary tumor virus (MMTV) genomic RNA.
Mustafa F; Vivet-Boudou V; Jabeen A; Ali LM; Kalloush RM; Marquet R; Rizvi TA
RNA Biol; 2018; 15(8):1047-1059. PubMed ID: 29929424
[TBL] [Abstract][Full Text] [Related]
17. Highly conserved s2m element of SARS-CoV-2 dimerizes via a kissing complex and interacts with host miRNA-1307-3p.
Imperatore JA; Cunningham CL; Pellegrene KA; Brinson RG; Marino JP; Evanseck JD; Mihailescu MR
Nucleic Acids Res; 2022 Jan; 50(2):1017-1032. PubMed ID: 34908151
[TBL] [Abstract][Full Text] [Related]
18. The RNA Architecture of the SARS-CoV-2 3'-Untranslated Region.
Zhao J; Qiu J; Aryal S; Hackett JL; Wang J
Viruses; 2020 Dec; 12(12):. PubMed ID: 33371200
[TBL] [Abstract][Full Text] [Related]
19.
Richter C; Hohmann KF; Toews S; Mathieu D; Altincekic N; Bains JK; Binas O; Ceylan B; Duchardt-Ferner E; Ferner J; Fürtig B; Grün JT; Hengesbach M; Hymon D; Jonker HRA; Knezic B; Korn SM; Landgraf T; Löhr F; Peter SA; Pyper DJ; Qureshi NS; Schlundt A; Schnieders R; Stirnal E; Sudakov A; Vögele J; Weigand JE; Wirmer-Bartoschek J; Witt K; Wöhnert J; Schwalbe H; Wacker A
Biomol NMR Assign; 2021 Oct; 15(2):467-474. PubMed ID: 34453696
[TBL] [Abstract][Full Text] [Related]
20. Structure of the 5' untranslated region in SARS-CoV-2 genome and its specific recognition by innate immune system
Bignon E; Miclot T; Terenzi A; Barone G; Monari A
Chem Commun (Camb); 2022 Feb; 58(13):2176-2179. PubMed ID: 35060977
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]