These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

148 related articles for article (PubMed ID: 37791884)

  • 1. MiST 4.0: a new release of the microbial signal transduction database, now with a metagenomic component.
    Gumerov VM; Ulrich LE; Zhulin IB
    Nucleic Acids Res; 2024 Jan; 52(D1):D647-D653. PubMed ID: 37791884
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MiST 3.0: an updated microbial signal transduction database with an emphasis on chemosensory systems.
    Gumerov VM; Ortega DR; Adebali O; Ulrich LE; Zhulin IB
    Nucleic Acids Res; 2020 Jan; 48(D1):D459-D464. PubMed ID: 31754718
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluating
    Vosloo S; Huo L; Anderson CL; Dai Z; Sevillano M; Pinto A
    Microbiol Spectr; 2021 Dec; 9(3):e0143421. PubMed ID: 34730411
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery.
    Stewart RD; Auffret MD; Warr A; Walker AW; Roehe R; Watson M
    Nat Biotechnol; 2019 Aug; 37(8):953-961. PubMed ID: 31375809
    [TBL] [Abstract][Full Text] [Related]  

  • 5. VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes.
    Espinoza JL; Dupont CL
    BMC Bioinformatics; 2022 Oct; 23(1):419. PubMed ID: 36224545
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MarkerMAG: linking metagenome-assembled genomes (MAGs) with 16S rRNA marker genes using paired-end short reads.
    Song W; Zhang S; Thomas T
    Bioinformatics; 2022 Aug; 38(15):3684-3688. PubMed ID: 35713513
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The MiST2 database: a comprehensive genomics resource on microbial signal transduction.
    Ulrich LE; Zhulin IB
    Nucleic Acids Res; 2010 Jan; 38(Database issue):D401-7. PubMed ID: 19900966
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes.
    Yin X; Jiang XT; Chai B; Li L; Yang Y; Cole JR; Tiedje JM; Zhang T
    Bioinformatics; 2018 Jul; 34(13):2263-2270. PubMed ID: 29408954
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes.
    Vernette C; Lecubin J; Sánchez P; ; Sunagawa S; Delmont TO; Acinas SG; Pelletier E; Hingamp P; Lescot M
    Nucleic Acids Res; 2022 Jul; 50(W1):W516-W526. PubMed ID: 35687095
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Novel Insights into the Pig Gut Microbiome Using Metagenome-Assembled Genomes.
    Holman DB; Kommadath A; Tingley JP; Abbott DW
    Microbiol Spectr; 2022 Aug; 10(4):e0238022. PubMed ID: 35880887
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The Reliability of Metagenome-Assembled Genomes (MAGs) in Representing Natural Populations: Insights from Comparing MAGs against Isolate Genomes Derived from the Same Fecal Sample.
    Meziti A; Rodriguez-R LM; Hatt JK; Peña-Gonzalez A; Levy K; Konstantinidis KT
    Appl Environ Microbiol; 2021 Feb; 87(6):. PubMed ID: 33452027
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.
    Asnicar F; Thomas AM; Beghini F; Mengoni C; Manara S; Manghi P; Zhu Q; Bolzan M; Cumbo F; May U; Sanders JG; Zolfo M; Kopylova E; Pasolli E; Knight R; Mirarab S; Huttenhower C; Segata N
    Nat Commun; 2020 May; 11(1):2500. PubMed ID: 32427907
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Phyletic Distribution and Lineage-Specific Domain Architectures of Archaeal Two-Component Signal Transduction Systems.
    Galperin MY; Makarova KS; Wolf YI; Koonin EV
    J Bacteriol; 2018 Apr; 200(7):. PubMed ID: 29263101
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Characterization of metagenome-assembled genomes from the International Space Station.
    Singh NK; Wood JM; Patane J; Moura LMS; Lombardino J; Setubal JC; Venkateswaran K
    Microbiome; 2023 Jun; 11(1):125. PubMed ID: 37264385
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean.
    Royo-Llonch M; Sánchez P; Ruiz-González C; Salazar G; Pedrós-Alió C; Sebastián M; Labadie K; Paoli L; M Ibarbalz F; Zinger L; Churcheward B; ; Chaffron S; Eveillard D; Karsenti E; Sunagawa S; Wincker P; Karp-Boss L; Bowler C; Acinas SG
    Nat Microbiol; 2021 Dec; 6(12):1561-1574. PubMed ID: 34782724
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MGnify Genomes: A Resource for Biome-specific Microbial Genome Catalogues.
    Gurbich TA; Almeida A; Beracochea M; Burdett T; Burgin J; Cochrane G; Raj S; Richardson L; Rogers AB; Sakharova E; Salazar GA; Finn RD
    J Mol Biol; 2023 Jul; 435(14):168016. PubMed ID: 36806692
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Metagenome-Assembled Genomes Contribute to Unraveling of the Microbiome of Cocoa Fermentation.
    Almeida OGG; De Martinis ECP
    Appl Environ Microbiol; 2021 Jul; 87(16):e0058421. PubMed ID: 34105982
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MiST: a microbial signal transduction database.
    Ulrich LE; Zhulin IB
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D386-90. PubMed ID: 17135192
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life.
    Parks DH; Rinke C; Chuvochina M; Chaumeil PA; Woodcroft BJ; Evans PN; Hugenholtz P; Tyson GW
    Nat Microbiol; 2017 Nov; 2(11):1533-1542. PubMed ID: 28894102
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Metagenomic insights into genetic factors driving bacterial niche differentiation between bulk and rhizosphere soils.
    Wu X; Bei S; Zhou X; Luo Y; He Z; Song C; Yuan H; Pivato B; Liesack W; Peng J
    Sci Total Environ; 2023 Sep; 891():164221. PubMed ID: 37263432
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.