174 related articles for article (PubMed ID: 37798248)
81. Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology.
Ruan J; Jiang L; Chong Z; Gong Q; Li H; Li C; Tao Y; Zheng C; Zhai W; Turissini D; Cannon CH; Lu X; Wu CI
BMC Genomics; 2013 Oct; 14(1):711. PubMed ID: 24134808
[TBL] [Abstract][Full Text] [Related]
82. Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.
Boisvert S; Laviolette F; Corbeil J
J Comput Biol; 2010 Nov; 17(11):1519-33. PubMed ID: 20958248
[TBL] [Abstract][Full Text] [Related]
83. Benchmarking hybrid assemblies of Giardia and prediction of widespread intra-isolate structural variation.
Pollo SMJ; Reiling SJ; Wit J; Workentine ML; Guy RA; Batoff GW; Yee J; Dixon BR; Wasmuth JD
Parasit Vectors; 2020 Feb; 13(1):108. PubMed ID: 32111234
[TBL] [Abstract][Full Text] [Related]
84. Strainline: full-length de novo viral haplotype reconstruction from noisy long reads.
Luo X; Kang X; Schönhuth A
Genome Biol; 2022 Jan; 23(1):29. PubMed ID: 35057847
[TBL] [Abstract][Full Text] [Related]
85. Comparative analysis of de novo assemblers for variation discovery in personal genomes.
Tian S; Yan H; Klee EW; Kalmbach M; Slager SL
Brief Bioinform; 2018 Sep; 19(5):893-904. PubMed ID: 28407084
[TBL] [Abstract][Full Text] [Related]
86. Choice of assemblers has a critical impact on de novo assembly of SARS-CoV-2 genome and characterizing variants.
Islam R; Raju RS; Tasnim N; Shihab IH; Bhuiyan MA; Araf Y; Islam T
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33822878
[TBL] [Abstract][Full Text] [Related]
87. Fully Phased Sequence of a Diploid Human Genome Determined
Soifer L; Fong NL; Yi N; Ireland AT; Lam I; Sooknah M; Paw JS; Peluso P; Concepcion GT; Rank D; Hastie AR; Jojic V; Ruby JG; Botstein D; Roy MA
G3 (Bethesda); 2020 Sep; 10(9):2911-2925. PubMed ID: 32631951
[TBL] [Abstract][Full Text] [Related]
88. RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads.
Liao X; Gao X; Zhang X; Wu FX; Wang J
BMC Bioinformatics; 2020 Oct; 21(1):463. PubMed ID: 33076827
[TBL] [Abstract][Full Text] [Related]
89. Redundans: an assembly pipeline for highly heterozygous genomes.
Pryszcz LP; Gabaldón T
Nucleic Acids Res; 2016 Jul; 44(12):e113. PubMed ID: 27131372
[TBL] [Abstract][Full Text] [Related]
90. Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools.
Kisand V; Lettieri T
BMC Genomics; 2013 Apr; 14():211. PubMed ID: 23547799
[TBL] [Abstract][Full Text] [Related]
91. Assembly and annotation of a non-model gastropod (Nerita melanotragus) transcriptome: a comparison of de novo assemblers.
Amin S; Prentis PJ; Gilding EK; Pavasovic A
BMC Res Notes; 2014 Aug; 7():488. PubMed ID: 25084827
[TBL] [Abstract][Full Text] [Related]
92. Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies.
Sharon BM; Hulyalkar NV; Nguyen VH; Zimmern PE; Palmer KL; De Nisco NJ
J Vis Exp; 2021 Aug; (174):. PubMed ID: 34487123
[TBL] [Abstract][Full Text] [Related]
93. Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing.
Wick RR; Judd LM; Holt KE
PLoS Comput Biol; 2023 Mar; 19(3):e1010905. PubMed ID: 36862631
[TBL] [Abstract][Full Text] [Related]
94. Identifying wrong assemblies in de novo short read primary sequence assembly contigs.
Chawla V; Kumar R; Shankar R
J Biosci; 2016 Sep; 41(3):455-74. PubMed ID: 27581937
[TBL] [Abstract][Full Text] [Related]
95. Assembler for de novo assembly of large genomes.
Chu TC; Lu CH; Liu T; Lee GC; Li WH; Shih AC
Proc Natl Acad Sci U S A; 2013 Sep; 110(36):E3417-24. PubMed ID: 23966565
[TBL] [Abstract][Full Text] [Related]
96. Comparison of assembly algorithms for improving rate of metatranscriptomic functional annotation.
Celaj A; Markle J; Danska J; Parkinson J
Microbiome; 2014; 2():39. PubMed ID: 25411636
[TBL] [Abstract][Full Text] [Related]
97. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
Yang WY; Hormozdiari F; Wang Z; He D; Pasaniuc B; Eskin E
Bioinformatics; 2013 Sep; 29(18):2245-52. PubMed ID: 23825370
[TBL] [Abstract][Full Text] [Related]
98. De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping.
Olsen RA; Bunikis I; Tiukova I; Holmberg K; Lötstedt B; Pettersson OV; Passoth V; Käller M; Vezzi F
Gigascience; 2015; 4():56. PubMed ID: 26617983
[TBL] [Abstract][Full Text] [Related]
99. De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads.
Korlach J; Gedman G; Kingan SB; Chin CS; Howard JT; Audet JN; Cantin L; Jarvis ED
Gigascience; 2017 Oct; 6(10):1-16. PubMed ID: 29020750
[TBL] [Abstract][Full Text] [Related]
100. A practical comparison of the next-generation sequencing platform and assemblers using yeast genome.
Jeon MS; Jeong DM; Doh H; Kang HA; Jung H; Eyun SI
Life Sci Alliance; 2023 Apr; 6(4):. PubMed ID: 36746534
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
