126 related articles for article (PubMed ID: 37800906)
1. Dinucleotide biases in RNA viruses that infect vertebrates or invertebrates.
Forni D; Pozzoli U; Cagliani R; Clerici M; Sironi M
Microbiol Spectr; 2023 Dec; 11(6):e0252923. PubMed ID: 37800906
[TBL] [Abstract][Full Text] [Related]
2. The dinucleotide composition of the Zika virus genome is shaped by conflicting evolutionary pressures in mammalian hosts and mosquito vectors.
Fros JJ; Visser I; Tang B; Yan K; Nakayama E; Visser TM; Koenraadt CJM; van Oers MM; Pijlman GP; Suhrbier A; Simmonds P
PLoS Biol; 2021 Apr; 19(4):e3001201. PubMed ID: 33872300
[TBL] [Abstract][Full Text] [Related]
3. Does the Zinc Finger Antiviral Protein (ZAP) Shape the Evolution of Herpesvirus Genomes?
Lin YT; Chau LF; Coutts H; Mahmoudi M; Drampa V; Lee CH; Brown A; Hughes DJ; Grey F
Viruses; 2021 Sep; 13(9):. PubMed ID: 34578438
[TBL] [Abstract][Full Text] [Related]
4. CpG dinucleotide frequencies reveal the role of host methylation capabilities in parvovirus evolution.
Upadhyay M; Samal J; Kandpal M; Vasaikar S; Biswas B; Gomes J; Vivekanandan P
J Virol; 2013 Dec; 87(24):13816-24. PubMed ID: 24109231
[TBL] [Abstract][Full Text] [Related]
5. Association of Zinc Finger Antiviral Protein Binding to Viral Genomic RNA with Attenuation of Replication of Echovirus 7.
Goonawardane N; Nguyen D; Simmonds P
mSphere; 2021 Jan; 6(1):. PubMed ID: 33408233
[TBL] [Abstract][Full Text] [Related]
6. Evolution and diversity of nucleotide and dinucleotide composition in poxviruses.
Molteni C; Forni D; Cagliani R; Bravo IG; Sironi M
J Gen Virol; 2023 Oct; 104(10):. PubMed ID: 37792576
[TBL] [Abstract][Full Text] [Related]
7. Patterns of evolution and host gene mimicry in influenza and other RNA viruses.
Greenbaum BD; Levine AJ; Bhanot G; Rabadan R
PLoS Pathog; 2008 Jun; 4(6):e1000079. PubMed ID: 18535658
[TBL] [Abstract][Full Text] [Related]
8. Comparison of CpG- and UpA-mediated restriction of RNA virus replication in mammalian and avian cells and investigation of potential ZAP-mediated shaping of host transcriptome compositions.
Odon V; Fiddaman SR; Smith AL; Simmonds P
RNA; 2022 Aug; 28(8):1089-1109. PubMed ID: 35675984
[TBL] [Abstract][Full Text] [Related]
9. A Nuclear Export Signal in KHNYN Required for Its Antiviral Activity Evolved as ZAP Emerged in Tetrapods.
Lista MJ; Ficarelli M; Wilson H; Kmiec D; Youle RL; Wanford J; Winstone H; Odendall C; Taylor IA; Neil SJD; Swanson CM
J Virol; 2023 Jan; 97(1):e0087222. PubMed ID: 36633408
[TBL] [Abstract][Full Text] [Related]
10. Modelling mutational and selection pressures on dinucleotides in eukaryotic phyla--selection against CpG and UpA in cytoplasmically expressed RNA and in RNA viruses.
Simmonds P; Xia W; Baillie JK; McKinnon K
BMC Genomics; 2013 Sep; 14():610. PubMed ID: 24020411
[TBL] [Abstract][Full Text] [Related]
11. Dinucleotide biases in the genomes of prokaryotic and eukaryotic dsDNA viruses and their hosts.
Forni D; Pozzoli U; Cagliani R; Sironi M
Mol Ecol; 2024 Mar; 33(6):e17287. PubMed ID: 38263702
[TBL] [Abstract][Full Text] [Related]
12. Plant Virus Genome Is Shaped by Specific Dinucleotide Restrictions That Influence Viral Infection.
González de Prádena A; Sánchez Jimenez A; San León D; Simmonds P; García JA; Valli AA
mBio; 2020 Feb; 11(1):. PubMed ID: 32071264
[TBL] [Abstract][Full Text] [Related]
13. Extreme Genomic CpG Deficiency in SARS-CoV-2 and Evasion of Host Antiviral Defense.
Xia X
Mol Biol Evol; 2020 Sep; 37(9):2699-2705. PubMed ID: 32289821
[TBL] [Abstract][Full Text] [Related]
14. SARS-CoV-2 Is Restricted by Zinc Finger Antiviral Protein despite Preadaptation to the Low-CpG Environment in Humans.
Nchioua R; Kmiec D; Müller JA; Conzelmann C; Groß R; Swanson CM; Neil SJD; Stenger S; Sauter D; Münch J; Sparrer KMJ; Kirchhoff F
mBio; 2020 Oct; 11(5):. PubMed ID: 33067384
[TBL] [Abstract][Full Text] [Related]
15. Comparative genomic study reveals a transition from TA richness in invertebrates to GC richness in vertebrates at CpG flanking sites: an indication for context-dependent mutagenicity of methylated CpG sites.
Wang Y; Leung FC
Genomics Proteomics Bioinformatics; 2008 Dec; 6(3-4):144-54. PubMed ID: 19329065
[TBL] [Abstract][Full Text] [Related]
16. Coronavirus genomes carry the signatures of their habitats.
Wei Y; Silke JR; Aris P; Xia X
PLoS One; 2020; 15(12):e0244025. PubMed ID: 33351847
[TBL] [Abstract][Full Text] [Related]
17. Systematic CpT (ApG) depletion and CpG excess are unique genomic signatures of large DNA viruses infecting invertebrates.
Upadhyay M; Sharma N; Vivekanandan P
PLoS One; 2014; 9(11):e111793. PubMed ID: 25369195
[TBL] [Abstract][Full Text] [Related]
18. S-farnesylation is essential for antiviral activity of the long ZAP isoform against RNA viruses with diverse replication strategies.
Kmiec D; Lista MJ; Ficarelli M; Swanson CM; Neil SJD
PLoS Pathog; 2021 Oct; 17(10):e1009726. PubMed ID: 34695163
[TBL] [Abstract][Full Text] [Related]
19. CpG Dinucleotides Inhibit HIV-1 Replication through Zinc Finger Antiviral Protein (ZAP)-Dependent and -Independent Mechanisms.
Ficarelli M; Antzin-Anduetza I; Hugh-White R; Firth AE; Sertkaya H; Wilson H; Neil SJD; Schulz R; Swanson CM
J Virol; 2020 Feb; 94(6):. PubMed ID: 31748389
[TBL] [Abstract][Full Text] [Related]
20. The role of ZAP and OAS3/RNAseL pathways in the attenuation of an RNA virus with elevated frequencies of CpG and UpA dinucleotides.
Odon V; Fros JJ; Goonawardane N; Dietrich I; Ibrahim A; Alshaikhahmed K; Nguyen D; Simmonds P
Nucleic Acids Res; 2019 Sep; 47(15):8061-8083. PubMed ID: 31276592
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]