167 related articles for article (PubMed ID: 37833843)
1. MkcDBGAS: a reference-free approach to identify comprehensive alternative splicing events in a transcriptome.
Zhang Q; Cao L; Song H; Lin K; Pang E
Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37833843
[TBL] [Abstract][Full Text] [Related]
2. A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis.
Zhang R; Kuo R; Coulter M; Calixto CPG; Entizne JC; Guo W; Marquez Y; Milne L; Riegler S; Matsui A; Tanaka M; Harvey S; Gao Y; Wießner-Kroh T; Paniagua A; Crespi M; Denby K; Hur AB; Huq E; Jantsch M; Jarmolowski A; Koester T; Laubinger S; Li QQ; Gu L; Seki M; Staiger D; Sunkar R; Szweykowska-Kulinska Z; Tu SL; Wachter A; Waugh R; Xiong L; Zhang XN; Conesa A; Reddy ASN; Barta A; Kalyna M; Brown JWS
Genome Biol; 2022 Jul; 23(1):149. PubMed ID: 35799267
[TBL] [Abstract][Full Text] [Related]
3. AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.
Zhang R; Calixto CP; Tzioutziou NA; James AB; Simpson CG; Guo W; Marquez Y; Kalyna M; Patro R; Eyras E; Barta A; Nimmo HG; Brown JW
New Phytol; 2015 Oct; 208(1):96-101. PubMed ID: 26111100
[TBL] [Abstract][Full Text] [Related]
4. ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events.
Denti L; Rizzi R; Beretta S; Vedova GD; Previtali M; Bonizzoni P
BMC Bioinformatics; 2018 Nov; 19(1):444. PubMed ID: 30458725
[TBL] [Abstract][Full Text] [Related]
5. A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-Seq data.
Sze SH; Tarone AM
BMC Genomics; 2014; 15 Suppl 5(Suppl 5):S6. PubMed ID: 25082000
[TBL] [Abstract][Full Text] [Related]
6. Universal Alternative Splicing of Noncoding Exons.
Deveson IW; Brunck ME; Blackburn J; Tseng E; Hon T; Clark TA; Clark MB; Crawford J; Dinger ME; Nielsen LK; Mattick JS; Mercer TR
Cell Syst; 2018 Feb; 6(2):245-255.e5. PubMed ID: 29396323
[TBL] [Abstract][Full Text] [Related]
7. AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
Fahmi NA; Nassereddeen H; Chang J; Park M; Yeh H; Sun J; Fan D; Yong J; Zhang W
Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33922891
[TBL] [Abstract][Full Text] [Related]
8. SplicingCompass: differential splicing detection using RNA-seq data.
Aschoff M; Hotz-Wagenblatt A; Glatting KH; Fischer M; Eils R; König R
Bioinformatics; 2013 May; 29(9):1141-8. PubMed ID: 23449093
[TBL] [Abstract][Full Text] [Related]
9. IsoTools: a flexible workflow for long-read transcriptome sequencing analysis.
Lienhard M; van den Beucken T; Timmermann B; Hochradel M; Börno S; Caiment F; Vingron M; Herwig R
Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37267159
[TBL] [Abstract][Full Text] [Related]
10. Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).
Schafer S; Miao K; Benson CC; Heinig M; Cook SA; Hubner N
Curr Protoc Hum Genet; 2015 Oct; 87():11.16.1-11.16.14. PubMed ID: 26439713
[TBL] [Abstract][Full Text] [Related]
11. Identifying differential alternative splicing events from RNA sequencing data using RNASeq-MATS.
Park JW; Tokheim C; Shen S; Xing Y
Methods Mol Biol; 2013; 1038():171-9. PubMed ID: 23872975
[TBL] [Abstract][Full Text] [Related]
12. PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice.
Zhang G; Sun M; Wang J; Lei M; Li C; Zhao D; Huang J; Li W; Li S; Li J; Yang J; Luo Y; Hu S; Zhang B
Plant J; 2019 Jan; 97(2):296-305. PubMed ID: 30288819
[TBL] [Abstract][Full Text] [Related]
13. Detection of generic differential RNA processing events from RNA-seq data.
Tran Vdu T; Souiai O; Romero-Barrios N; Crespi M; Gautheret D
RNA Biol; 2016; 13(1):59-67. PubMed ID: 26849165
[TBL] [Abstract][Full Text] [Related]
14. KISSPLICE: de-novo calling alternative splicing events from RNA-seq data.
Sacomoto GA; Kielbassa J; Chikhi R; Uricaru R; Antoniou P; Sagot MF; Peterlongo P; Lacroix V
BMC Bioinformatics; 2012 Apr; 13 Suppl 6(Suppl 6):S5. PubMed ID: 22537044
[TBL] [Abstract][Full Text] [Related]
15. Data Analysis Pipeline for RNA-seq Experiments: From Differential Expression to Cryptic Splicing.
Yalamanchili HK; Wan YW; Liu Z
Curr Protoc Bioinformatics; 2017 Sep; 59():11.15.1-11.15.21. PubMed ID: 28902396
[TBL] [Abstract][Full Text] [Related]
16. Global transcriptome analysis reveals circadian control of splicing events in Arabidopsis thaliana.
Romanowski A; Schlaen RG; Perez-Santangelo S; Mancini E; Yanovsky MJ
Plant J; 2020 Jul; 103(2):889-902. PubMed ID: 32314836
[TBL] [Abstract][Full Text] [Related]
17. Efficient and Accurate Quantitative Profiling of Alternative Splicing Patterns of Any Complexity on a Laptop.
Sterne-Weiler T; Weatheritt RJ; Best AJ; Ha KCH; Blencowe BJ
Mol Cell; 2018 Oct; 72(1):187-200.e6. PubMed ID: 30220560
[TBL] [Abstract][Full Text] [Related]
18. A survey of the full-length transcriptome of Gracilariopsis lemaneiformis using single-molecule long-read sequencing.
Chen X; Tang YY; Yin H; Sun X; Zhang X; Xu N
BMC Plant Biol; 2022 Dec; 22(1):597. PubMed ID: 36536287
[TBL] [Abstract][Full Text] [Related]
19. A comparison of mRNA sequencing (RNA-Seq) library preparation methods for transcriptome analysis.
Ura H; Togi S; Niida Y
BMC Genomics; 2022 Apr; 23(1):303. PubMed ID: 35418012
[TBL] [Abstract][Full Text] [Related]
20. DiffSplice: the genome-wide detection of differential splicing events with RNA-seq.
Hu Y; Huang Y; Du Y; Orellana CF; Singh D; Johnson AR; Monroy A; Kuan PF; Hammond SM; Makowski L; Randell SH; Chiang DY; Hayes DN; Jones C; Liu Y; Prins JF; Liu J
Nucleic Acids Res; 2013 Jan; 41(2):e39. PubMed ID: 23155066
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]