167 related articles for article (PubMed ID: 37847775)
21. MAGUS: Multiple sequence Alignment using Graph clUStering.
Smirnov V; Warnow T
Bioinformatics; 2021 Jul; 37(12):1666-1672. PubMed ID: 33252662
[TBL] [Abstract][Full Text] [Related]
22. Leveraging protein language models for accurate multiple sequence alignments.
McWhite CD; Armour-Garb I; Singh M
Genome Res; 2023 Jul; 33(7):1145-1153. PubMed ID: 37414576
[TBL] [Abstract][Full Text] [Related]
23. MAFFT-DASH: integrated protein sequence and structural alignment.
Rozewicki J; Li S; Amada KM; Standley DM; Katoh K
Nucleic Acids Res; 2019 Jul; 47(W1):W5-W10. PubMed ID: 31062021
[TBL] [Abstract][Full Text] [Related]
24. PFASUM: a substitution matrix from Pfam structural alignments.
Keul F; Hess M; Goesele M; Hamacher K
BMC Bioinformatics; 2017 Jun; 18(1):293. PubMed ID: 28583067
[TBL] [Abstract][Full Text] [Related]
25. Improved structure-related prediction for insufficient homologous proteins using MSA enhancement and pre-trained language model.
Meng Q; Guo F; Tang J
Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37321965
[TBL] [Abstract][Full Text] [Related]
26. Multiple Sequence Alignment Computation Using the T-Coffee Regressive Algorithm Implementation.
Garriga E; Di Tommaso P; Magis C; Erb I; Mansouri L; Baltzis A; Floden E; Notredame C
Methods Mol Biol; 2021; 2231():89-97. PubMed ID: 33289888
[TBL] [Abstract][Full Text] [Related]
27. Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments.
Sierk ML; Smoot ME; Bass EJ; Pearson WR
BMC Bioinformatics; 2010 Mar; 11():146. PubMed ID: 20307279
[TBL] [Abstract][Full Text] [Related]
28. IVisTMSA: Interactive Visual Tools for Multiple Sequence Alignments.
Pervez MT; Babar ME; Nadeem A; Aslam N; Naveed N; Ahmad S; Muhammad S; Qadri S; Shahid M; Hussain T; Javed M
Evol Bioinform Online; 2015; 11():35-42. PubMed ID: 25861209
[TBL] [Abstract][Full Text] [Related]
29. Large-scale comparison of protein sequence alignment algorithms with structure alignments.
Sauder JM; Arthur JW; Dunbrack RL
Proteins; 2000 Jul; 40(1):6-22. PubMed ID: 10813826
[TBL] [Abstract][Full Text] [Related]
30. SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation.
Anderson CL; Strope CL; Moriyama EN
BMC Bioinformatics; 2011 May; 12():184. PubMed ID: 21600033
[TBL] [Abstract][Full Text] [Related]
31. UniAlign: protein structure alignment meets evolution.
Zhao C; Sacan A
Bioinformatics; 2015 Oct; 31(19):3139-46. PubMed ID: 26059715
[TBL] [Abstract][Full Text] [Related]
32. PROCAIN: protein profile comparison with assisting information.
Wang Y; Sadreyev RI; Grishin NV
Nucleic Acids Res; 2009 Jun; 37(11):3522-30. PubMed ID: 19357092
[TBL] [Abstract][Full Text] [Related]
33. Alignment of helical membrane protein sequences using AlignMe.
Stamm M; Staritzbichler R; Khafizov K; Forrest LR
PLoS One; 2013; 8(3):e57731. PubMed ID: 23469223
[TBL] [Abstract][Full Text] [Related]
34. Sequoya: multiobjective multiple sequence alignment in Python.
BenÃtez-Hidalgo A; Nebro AJ; Aldana-Montes JF
Bioinformatics; 2020 Jun; 36(12):3892-3893. PubMed ID: 32315391
[TBL] [Abstract][Full Text] [Related]
35. Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.
Huang YM; Bystroff C
Bioinformatics; 2006 Feb; 22(4):413-22. PubMed ID: 16352653
[TBL] [Abstract][Full Text] [Related]
36. Alignment of distantly related protein structures: algorithm, bound and implications to homology modeling.
Wang S; Peng J; Xu J
Bioinformatics; 2011 Sep; 27(18):2537-45. PubMed ID: 21791532
[TBL] [Abstract][Full Text] [Related]
37. Measuring the distance between multiple sequence alignments.
Blackburne BP; Whelan S
Bioinformatics; 2012 Feb; 28(4):495-502. PubMed ID: 22199391
[TBL] [Abstract][Full Text] [Related]
38. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
Yang AS; Honig B
J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
[TBL] [Abstract][Full Text] [Related]
39. Local protein sequence similarity does not imply a structural relationship.
Sternberg MJ; Islam SA
Protein Eng; 1990 Dec; 4(2):125-31. PubMed ID: 2075187
[TBL] [Abstract][Full Text] [Related]
40. A simple genetic algorithm for multiple sequence alignment.
Gondro C; Kinghorn BP
Genet Mol Res; 2007 Oct; 6(4):964-82. PubMed ID: 18058716
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]