140 related articles for article (PubMed ID: 37851384)
1. Evaluation of haplotype-aware long-read error correction with hifieval.
Guo Y; Feng X; Li H
Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37851384
[TBL] [Abstract][Full Text] [Related]
2. Evaluation of haplotype-aware long-read error correction with hifieval.
Guo Y; Feng X; Li H
bioRxiv; 2023 Jun; ():. PubMed ID: 37333189
[TBL] [Abstract][Full Text] [Related]
3. Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations.
Cosma BM; Shirali Hossein Zade R; Jordan EN; van Lent P; Peng C; Pillay S; Abeel T
Gigascience; 2022 Dec; 12():. PubMed ID: 38000912
[TBL] [Abstract][Full Text] [Related]
4. HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads.
Nurk S; Walenz BP; Rhie A; Vollger MR; Logsdon GA; Grothe R; Miga KH; Eichler EE; Phillippy AM; Koren S
Genome Res; 2020 Sep; 30(9):1291-1305. PubMed ID: 32801147
[TBL] [Abstract][Full Text] [Related]
5. NextPolish2: A Repeat-aware Polishing Tool for Genomes Assembled Using HiFi Long Reads.
Hu J; Wang Z; Liang F; Liu SL; Ye K; Wang DP
Genomics Proteomics Bioinformatics; 2024 May; 22(1):. PubMed ID: 38862426
[TBL] [Abstract][Full Text] [Related]
6. Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads.
Shafin K; Pesout T; Chang PC; Nattestad M; Kolesnikov A; Goel S; Baid G; Kolmogorov M; Eizenga JM; Miga KH; Carnevali P; Jain M; Carroll A; Paten B
Nat Methods; 2021 Nov; 18(11):1322-1332. PubMed ID: 34725481
[TBL] [Abstract][Full Text] [Related]
7. CARE 2.0: reducing false-positive sequencing error corrections using machine learning.
Kallenborn F; Cascitti J; Schmidt B
BMC Bioinformatics; 2022 Jun; 23(1):227. PubMed ID: 35698033
[TBL] [Abstract][Full Text] [Related]
8. A hybrid and scalable error correction algorithm for indel and substitution errors of long reads.
Das AK; Goswami S; Lee K; Park SJ
BMC Genomics; 2019 Dec; 20(Suppl 11):948. PubMed ID: 31856721
[TBL] [Abstract][Full Text] [Related]
9. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
Du N; Chen J; Sun Y
BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
[TBL] [Abstract][Full Text] [Related]
10. Benchmarking of long-read sequencing, assemblers and polishers for yeast genome.
Zhang X; Liu CG; Yang SH; Wang X; Bai FW; Wang Z
Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35511110
[TBL] [Abstract][Full Text] [Related]
11. Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads.
Vollger MR; Logsdon GA; Audano PA; Sulovari A; Porubsky D; Peluso P; Wenger AM; Concepcion GT; Kronenberg ZN; Munson KM; Baker C; Sanders AD; Spierings DCJ; Lansdorp PM; Surti U; Hunkapiller MW; Eichler EE
Ann Hum Genet; 2020 Mar; 84(2):125-140. PubMed ID: 31711268
[TBL] [Abstract][Full Text] [Related]
12. ARAMIS: From systematic errors of NGS long reads to accurate assemblies.
Sacristán-Horcajada E; González-de la Fuente S; Peiró-Pastor R; Carrasco-Ramiro F; Amils R; Requena JM; Berenguer J; Aguado B
Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34013348
[TBL] [Abstract][Full Text] [Related]
13. Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing.
Sharma A; Jain P; Mahgoub A; Zhou Z; Mahadik K; Chaterji S
BMC Bioinformatics; 2022 Jan; 23(1):25. PubMed ID: 34991450
[TBL] [Abstract][Full Text] [Related]
14. phasebook: haplotype-aware de novo assembly of diploid genomes from long reads.
Luo X; Kang X; Schönhuth A
Genome Biol; 2021 Oct; 22(1):299. PubMed ID: 34706745
[TBL] [Abstract][Full Text] [Related]
15. JTK: targeted diploid genome assembler.
Masutani B; Suzuki Y; Suzuki Y; Morishita S
Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37354526
[TBL] [Abstract][Full Text] [Related]
16. Long amplicon HiFi sequencing for mitochondrial DNA genomes.
Cai ZF; Hu JY; Yin TT; Wang D; Shen QK; Ma C; Ou DQ; Xu MM; Shi X; Li QL; Wu RN; Ajuma L; Adeola AC; Zhang YP; Peng MS
Mol Ecol Resour; 2023 Jul; 23(5):1014-1022. PubMed ID: 36756726
[TBL] [Abstract][Full Text] [Related]
17. A complete pipeline enables haplotyping and phasing macrohaplotype in long sequencing reads for polyploidy samples and a multi-source DNA mixture.
Wang X; Muenzler M; King J; Liu M; Li H; Budowle B; Ge J
Electrophoresis; 2024 May; 45(9-10):877-884. PubMed ID: 38196015
[TBL] [Abstract][Full Text] [Related]
18. LRCstats, a tool for evaluating long reads correction methods.
La S; Haghshenas E; Chauve C
Bioinformatics; 2017 Nov; 33(22):3652-3654. PubMed ID: 29036421
[TBL] [Abstract][Full Text] [Related]
19. HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly.
Sim SB; Corpuz RL; Simmonds TJ; Geib SM
BMC Genomics; 2022 Feb; 23(1):157. PubMed ID: 35193521
[TBL] [Abstract][Full Text] [Related]
20. DCHap: A Divide-and-Conquer Haplotype Phasing Algorithm for Third-Generation Sequences.
Li Y; Lin Y
IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(3):1277-1284. PubMed ID: 32750878
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
