These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

176 related articles for article (PubMed ID: 37851697)

  • 1. Catalyst: Fast and flexible modeling of reaction networks.
    Loman TE; Ma Y; Ilin V; Gowda S; Korsbo N; Yewale N; Rackauckas C; Isaacson SA
    PLoS Comput Biol; 2023 Oct; 19(10):e1011530. PubMed ID: 37851697
    [TBL] [Abstract][Full Text] [Related]  

  • 2. BioSimulator.jl: Stochastic simulation in Julia.
    Landeros A; Stutz T; Keys KL; Alekseyenko A; Sinsheimer JS; Lange K; Sehl ME
    Comput Methods Programs Biomed; 2018 Dec; 167():23-35. PubMed ID: 30501857
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Stochastic simulation algorithms for Interacting Particle Systems.
    Stutz TC; Landeros A; Xu J; Sinsheimer JS; Sehl M; Lange K
    PLoS One; 2021; 16(3):e0247046. PubMed ID: 33651796
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Poincaré and SimBio: a versatile and extensible Python ecosystem for modeling systems.
    Silberberg M; Hermjakob H; Malik-Sheriff RS; Grecco HE
    Bioinformatics; 2024 Aug; 40(8):. PubMed ID: 39078116
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SBMLToolkit.jl: a Julia package for importing SBML into the SciML ecosystem.
    Lang PF; Jain A; Rackauckas C
    J Integr Bioinform; 2024 Mar; 21(1):. PubMed ID: 38801698
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Efficient computation of parameter sensitivities of discrete stochastic chemical reaction networks.
    Rathinam M; Sheppard PW; Khammash M
    J Chem Phys; 2010 Jan; 132(3):034103. PubMed ID: 20095724
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks.
    Machné R; Finney A; Müller S; Lu J; Widder S; Flamm C
    Bioinformatics; 2006 Jun; 22(11):1406-7. PubMed ID: 16527832
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MRIReco.jl: An MRI reconstruction framework written in Julia.
    Knopp T; Grosser M
    Magn Reson Med; 2021 Sep; 86(3):1633-1646. PubMed ID: 33817833
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Variable time-stepping in the pathwise numerical solution of the chemical Langevin equation.
    Ilie S
    J Chem Phys; 2012 Dec; 137(23):234110. PubMed ID: 23267474
    [TBL] [Abstract][Full Text] [Related]  

  • 10. DelaySSAToolkit.jl: stochastic simulation of reaction systems with time delays in Julia.
    Fu X; Zhou X; Gu D; Cao Z; Grima R
    Bioinformatics; 2022 Sep; 38(17):4243-4245. PubMed ID: 35799359
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions.
    Salis H; Kaznessis Y
    J Chem Phys; 2005 Feb; 122(5):54103. PubMed ID: 15740306
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A probability generating function method for stochastic reaction networks.
    Kim P; Lee CH
    J Chem Phys; 2012 Jun; 136(23):234108. PubMed ID: 22779582
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MONALISA for stochastic simulations of Petri net models of biochemical systems.
    Balazki P; Lindauer K; Einloft J; Ackermann J; Koch I
    BMC Bioinformatics; 2015 Jul; 16():215. PubMed ID: 26156221
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Time-ordered product expansions for computational stochastic system biology.
    Mjolsness E
    Phys Biol; 2013 Jun; 10(3):035009. PubMed ID: 23735739
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Modeling and simulation of intracellular dynamics: choosing an appropriate framework.
    Wolkenhauer O; Ullah M; Kolch W; Cho KH
    IEEE Trans Nanobioscience; 2004 Sep; 3(3):200-7. PubMed ID: 15473072
    [TBL] [Abstract][Full Text] [Related]  

  • 16. FERN - a Java framework for stochastic simulation and evaluation of reaction networks.
    Erhard F; Friedel CC; Zimmer R
    BMC Bioinformatics; 2008 Aug; 9():356. PubMed ID: 18755046
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Block Search Stochastic Simulation Algorithm (BlSSSA): A Fast Stochastic Simulation Algorithm for Modeling Large Biochemical Networks.
    Ghosh D; De RK
    IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(4):2111-2123. PubMed ID: 33788690
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Fast stochastic simulation of biochemical reaction systems by alternative formulations of the chemical Langevin equation.
    Mélykúti B; Burrage K; Zygalakis KC
    J Chem Phys; 2010 Apr; 132(16):164109. PubMed ID: 20441260
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Reliable and efficient parameter estimation using approximate continuum limit descriptions of stochastic models.
    Simpson MJ; Baker RE; Buenzli PR; Nicholson R; Maclaren OJ
    J Theor Biol; 2022 Sep; 549():111201. PubMed ID: 35752285
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Lattice Microbes: high-performance stochastic simulation method for the reaction-diffusion master equation.
    Roberts E; Stone JE; Luthey-Schulten Z
    J Comput Chem; 2013 Jan; 34(3):245-55. PubMed ID: 23007888
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.